FMO12154.5prime Sequence
948 bp (948 high quality bases) assembled on 2012-07-23
> FMO12154.5prime
CAGTCGACATGCAGCGCCTGACGAAATCGTTACGTTCACTTCCATTTCCC
GCGGGAAAGATCCTGCGAACCCAATTGGTGGTCAGAAGGGAGTACTCCTC
GGAAATACCGGATCCCGTTGAACTAAGCTTCGATTCGTACACCGGCGAGA
ATCCAGAGACGAGTCCACCACTGCTCACATATCATGGACTCTTTGGTTCC
AAGCAAAATTGGCGAGGAATTAGCAAGGCTCTGGTGCGAAAAGTTTCCCG
AAAGGTGTACGCCATCGATGTGAGGAATCATGGCGAGAGTCCACATTCGA
GTGTCCACAATTCCAAAGCGATGAGCGAGGATTTGCGTTTGTTTATGGAG
CAGCGCAGTCATCCGAATGCCGCCTGCATGGGTCACAGCATGGGCGGCAG
GTCCATGATGTACTTCGCTCGAAAATATCCCGAGTTGGTGGAACGTTTGA
TAGTGGTGGACATATCGCCAATTAGCGTGCCCCGTTCCACGGGCGAGATG
ACGGAAATTTTCGACGCGATGGTCTCCCTGGACCTTTCGCCAAGCATGTC
CATGTCTGAGGGCAGGAAAATTGCACGGGAAAAACTACTGAAAGCCACCG
AAGACGAGACCGTTGACTTTATCATGCTGAATCTCCGAAAAAATCCTGAC
ACCGGCGCTTTCTCTTGGGCCTGCAATGCCCATGTTCTTCGTGAATTCCT
CACCCGCTTCGACAAATATCAGAGTAATTTGGAGGAACTGCCGCCGTACA
CGGGACCCACTACGTTCATTTGCGGCACGCGATCACCTTACATGAGACGC
GAGCAATGGCCACAGATACAGAAAATGTTTCCCAATTCTGAGATCCACTG
GCTGGATGCCGGACATTTAGTGCACTTTGAAAAGCCGCAGAGTTTCTAAC
AATAGTCAGCGAGTTCCTGAATAGAACTGAGCAAGCTTTCTAGACCAT
FMO12154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2059-RB | 1141 | CG2059-RB | 147..1070 | 9..931 | 4595 | 99.9 | Plus |
| CG2059-RA | 1197 | CG2059-RA | 203..1126 | 9..931 | 4595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7286853..7287101 | 9..257 | 1245 | 100 | Plus |
| X | 23542271 | X | 7287407..7287640 | 425..658 | 1155 | 99.6 | Plus |
| X | 23542271 | X | 7287170..7287345 | 253..428 | 880 | 100 | Plus |
| X | 23542271 | X | 7287709..7287846 | 659..796 | 690 | 100 | Plus |
| X | 23542271 | X | 7287909..7288046 | 795..931 | 640 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:57:40 has no hits.
FMO12154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:11 Download gff for
FMO12154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RB | 141..1070 | 1..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:19 Download gff for
FMO12154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RA | 197..1126 | 1..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:02 Download gff for
FMO12154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2059-RA | 197..1126 | 1..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:02 Download gff for
FMO12154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7286847..7287098 | 1..254 | 98 | -> | Plus |
| X | 7287172..7287345 | 255..428 | 100 | -> | Plus |
| X | 7287411..7287640 | 429..658 | 100 | -> | Plus |
| X | 7287709..7287846 | 659..796 | 100 | -> | Plus |
| X | 7287911..7288046 | 797..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:19 Download gff for
FMO12154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7181742..7181879 | 659..796 | 100 | -> | Plus |
| arm_X | 7181944..7182079 | 797..931 | 99 | | Plus |
| arm_X | 7180880..7181131 | 1..254 | 98 | -> | Plus |
| arm_X | 7181205..7181378 | 255..428 | 100 | -> | Plus |
| arm_X | 7181444..7181673 | 429..658 | 100 | -> | Plus |
