FMO12155.5prime Sequence
1109 bp (926 high quality bases) assembled on 2012-07-23
> FMO12155.5prime
CAGTCGACATGAGGCTGTTCGCAGTGATTTTTTGGATAGGCTGGGCCTTT
GGCCTAGCGAATTCCAAGAACCCGAGTGCCGAGACGGGCAGACTGATAGC
ATCTCTACAAGCTGCTCCGGCTCCGGCGCCAGCACAAAGTGTGATCTACA
AGCTGCCACCACAGCACTACTATCCGCCACCACCGCCGCCGCCTCCGCCT
CCGCCACAGCACTGCAATTGCCCGCCAGGTCCACCGGGGCCTCCTGGACC
GCCGGGCTTACCAGGAACGCCTGGTCCGCAAGGTCCCAAGGGACACACTG
GGTCCAAGGGCGAGCGAGGAGAGAAGGGAGAACGCGGTCACTACGGACTA
CCAGGCCAACCAGGTGAACCGGGACCTATTGGTCCACCGGGACTACCAGG
CCCACCCGGTCACAAGTCGGGACATGGTCACCATGATCATCATGATCACC
TTCATCATCATCCAGCGCCACCGCCACCACCTCCACCTCCGCCTCCGCCG
CCTCCACCACCACCACCACCACACTCACACCCGCATTCACATCATCCCCA
CCCGCCGATCGTGACGCCACCAATTATAGTTCCCATACCATTGCCACCGC
AGAAAGGTGAACATGGTCACCATCATCACCACAAGGGATCCAAAGGTCCA
CCCGGACCTCCAGGCCCACCAGGAACGGGACCACCGGGTCCTCCAGGACC
TCCAGGCACTACGTATCCCACAACCCCCACCACCACCACCACCACCGCCA
CCTCCACCACCATCGTACCCATACCCACCGTACCCGTATCCACCACCTGG
TCCTTATTCCGGGACCATGGATTCCTCTGCCAGTGCCAGTGCCCTGGCCC
TCAAAGGGACATAAGGGGATAAAGGTCACAAAGGAGGTCATACGGAGACA
TGGCGGACACCACCATCACTATTATCCACCATGAACACGATAAGGGAGCT
ACTATCCGTATTCACCCCACGGTGGCCATGGATGCCATCACATCCAGGCA
TATTAATCAGACCCTATCGCACAATATAACTTCACCATCCACATTGAATG
GCGAAAACAAGGATATCACCATTATCCCCTCCCACAATCCGTAGACACAA
ACTTCGGGG
FMO12155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:57:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5225-RA | 1835 | CG5225-RA | 9..1100 | 4..1089 | 4755 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17028797..17029432 | 38..673 | 3150 | 99.7 | Plus |
| 3R | 32079331 | 3R | 17029541..17029863 | 670..991 | 1205 | 96.3 | Plus |
Blast to na_te.dros performed 2014-11-28 17:57:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 897..964 | 176..238 | 112 | 67.6 | Plus |
FMO12155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:12 Download gff for
FMO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 1..1093 | 9..1094 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:22 Download gff for
FMO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 5..1106 | 1..1094 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:05 Download gff for
FMO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5225-RA | 5..1106 | 1..1094 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:05 Download gff for
FMO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17028697..17028736 | 1..39 | 92 | -> | Plus |
| 3R | 17028799..17029431 | 40..672 | 99 | -> | Plus |
| 3R | 17029544..17029972 | 673..1094 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:22 Download gff for
FMO12155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12854419..12854458 | 1..39 | 92 | -> | Plus |
| arm_3R | 12854521..12855153 | 40..672 | 99 | -> | Plus |
| arm_3R | 12855266..12855694 | 673..1094 | 91 | | Plus |
