FMO12156.5prime Sequence
994 bp (994 high quality bases) assembled on 2012-07-23
> FMO12156.5prime
CAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCACACCCACT
GTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCTATTCTGCG
CAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCATCGAGATCC
TGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGGCGTTCAAG
ACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAACTGGGCGG
CAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCCCCAGTTCT
ATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCGACGAGGAG
GCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATCAAGACCAT
TGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTCCGACCTGA
AGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGCTCGTCCAG
GGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCCATCGCCGA
TGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCACAGATGAGT
CCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGCTGCGCCAG
ATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAGAAGGCCAT
CAAGCGGGAGTTTAGCGGCTCCGTGGAGAAGGGTTTCCTGGCCATCGTCA
AGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGCACGACTCA
ATGGCCGGCATGGGCACCAAGGACAAGACGCTGATCCGCATCATTGTCAG
CCGGTCGGAGATCGATCTGGGTGACATCAAGGAGGCATTCCAGAACAAGT
ACGGCAAGAGCTTGAGTCCTGATCAGGGCGATACATCCCGGCGATTATAG
CGTGCCCTATGGCTATTGTGGCTTCGCCAGCTTTTCTAGACCAT
FMO12156.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB9-RF | 1457 | CG5730-RF | 95..1066 | 9..975 | 4690 | 99.3 | Plus |
| AnxB9-RE | 1456 | CG5730-RE | 94..1065 | 9..975 | 4690 | 99.3 | Plus |
| AnxB9-RC | 1432 | CG5730-RC | 70..1041 | 9..975 | 4690 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21068067..21068777 | 37..747 | 3555 | 100 | Plus |
| 3R | 32079331 | 3R | 21068837..21069004 | 747..914 | 840 | 100 | Plus |
| X | 23542271 | X | 16418705..16418779 | 383..309 | 225 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:57:47 has no hits.
FMO12156.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:13 Download gff for
FMO12156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnnIX-RC | 74..1053 | 1..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:23 Download gff for
FMO12156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 62..1041 | 1..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:06 Download gff for
FMO12156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RC | 62..1041 | 1..975 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:06 Download gff for
FMO12156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21067462..21067499 | 1..38 | 92 | -> | Plus |
| 3R | 21068069..21068777 | 39..747 | 100 | -> | Plus |
| 3R | 21068838..21069019 | 748..926 | 98 | -> | Plus |
| 3R | 21069313..21069363 | 927..975 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:23 Download gff for
FMO12156.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16893184..16893221 | 1..38 | 92 | -> | Plus |
| arm_3R | 16893791..16894499 | 39..747 | 100 | -> | Plus |
| arm_3R | 16894560..16894741 | 748..926 | 98 | -> | Plus |
| arm_3R | 16895035..16895085 | 927..975 | 92 | | Plus |
