FMO12157.5prime Sequence
647 bp (557 high quality bases) assembled on 2012-07-23
> FMO12157.5prime
CAGTCGACATGCGAATTCTGAATTGCCGCATTTGCTCTAGATCAGATGCC
CCAATAGACCTTTTTGGTCCAGGAAACGGTCATCTAGTTCGTCAAATTCA
CTCCATTACTGGGGTGGAGCTAAGCTGCAAGAAAGAAATATCCGGCCAAA
TGTGCACGACTTGCCTGGACAATCTGCAGGCAGCCATTAAGTTCCGCCAG
CGCTGCATCATTGCCGAGAAACAGAATCTGGAAAGGATTGAGTGCGACAG
CAAGGATTGCTCCACAGATCCAATAATATACGAAGACATCGATGATAACC
AAATTGAGAGTGAGTTGGACGAGTCCATTCTATGTCCTGAAGTCAAAGAT
CTTCCAATGCCAAGTGCTGAAAAGGTCTCAGCACCGACTAGTTTGAACCA
TCAAAAGTCAATTGGAGGAGGTACTGGTCCATATGTATGCCCTGATTGCG
GAAGGATCATTAACAATAAGTCAAACTTTCAAGAGCACACGCTCCGGCAA
AAAGGCATCAAGGAATTTCCCACTGTGTTTTTTTTGAATTGTGAAAAGGA
GCTTTGCAACTCGAAAAGGAACTGACTAGCCATACCCGTAACCACCACGG
GCGAGAAGCCATACGGGGGGGTCTACTGTCCACGTCGGTTCCCCTCC
FMO12157.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:57:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6813-RD | 1181 | CG6813-RD | 46..684 | 2..646 | 2925 | 97.5 | Plus |
| CG6813-RC | 991 | CG6813-RC | 46..684 | 2..646 | 2925 | 97.5 | Plus |
| CG6813-RB | 1251 | CG6813-RB | 46..684 | 2..646 | 2925 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11626003..11626417 | 534..118 | 1960 | 98.6 | Minus |
| 3R | 32079331 | 3R | 11626472..11626593 | 123..2 | 580 | 98.4 | Minus |
| 3R | 32079331 | 3R | 11625836..11625935 | 646..545 | 305 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:57:50 has no hits.
FMO12157.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:13 Download gff for
FMO12157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6813-RC | 45..684 | 1..647 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:26 Download gff for
FMO12157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6813-RB | 45..684 | 1..647 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:07 Download gff for
FMO12157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6813-RB | 45..684 | 1..647 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:07 Download gff for
FMO12157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11626003..11626415 | 120..534 | 99 | <- | Minus |
| 3R | 11626476..11626593 | 1..119 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:26 Download gff for
FMO12157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7452198..7452315 | 1..119 | 98 | | Minus |
| arm_3R | 7451725..7452137 | 120..534 | 99 | <- | Minus |
