FMO12158.5prime Sequence
548 bp (548 high quality bases) assembled on 2012-07-23
> FMO12158.5prime
CAGTCGACATGAGCGAATCCGGTGGCTATCAGAAAATGCCGCCCGGCTGG
GACTGCAAATACGATCAAGCAACTGGAAATTGCTATTACATAAACTATCT
GACGAAGGCCATGCAGCTGGAGGATCCGCGCGGCCGCAGTTACAGGCAGT
TGCAGAACGAACGCTGTTCCACGGAGTCGATAGCCTTGCAGCAGTTGGTC
AGTCAGCCGCAGACGTCGCACAACAGCTCGCCGTACCACGTCCATCCCAG
CAACAACTTGACTGCAATTCGGGCCTTCCAGGAGCGCCAGCAACCCACGC
TGCACAACATCTCTACCAGTCCATTGTTGTCGGCCTCCTCCAGGGGACAC
TTGGAAATGTCTTCACCTCTGCCCTTTCAACGAGCTCGCGTGGGACCGAA
TCTCTCGCGGCGCTCCACCATTCAGGAGACCTCGTTCACCACGCAAGCGG
AAACGGATGCCGTGGTGACCAAAATCCAGAACATGTTCCCCACCGCTGGC
GAGAACCATATACGTCTCCTGCTCAAGCGGGCAAGCTTTCTAGACCAT
FMO12158.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10508-RL | 2122 | CG10508-RL | 517..1037 | 9..529 | 2605 | 100 | Plus |
| CG10508-RK | 2986 | CG10508-RK | 517..1037 | 9..529 | 2605 | 100 | Plus |
| CG10508-RJ | 2983 | CG10508-RJ | 517..1034 | 9..529 | 2550 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21212781..21212958 | 353..530 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 21212224..21212389 | 189..354 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 21212049..21212158 | 82..191 | 550 | 100 | Plus |
| 3L | 28110227 | 3L | 21210731..21210804 | 9..82 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:57:21 has no hits.
FMO12158.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:07 Download gff for
FMO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RH | 495..1028 | 1..535 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:07 Download gff for
FMO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RL | 509..1037 | 1..529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:51 Download gff for
FMO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10508-RK | 509..1042 | 1..537 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:51 Download gff for
FMO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21210723..21210804 | 1..82 | 95 | -> | Plus |
| 3L | 21212050..21212158 | 83..191 | 100 | -> | Plus |
| 3L | 21212227..21212388 | 192..353 | 100 | -> | Plus |
| 3L | 21212782..21212962 | 354..535 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:07 Download gff for
FMO12158.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21203823..21203904 | 1..82 | 95 | -> | Plus |
| arm_3L | 21205150..21205258 | 83..191 | 100 | -> | Plus |
| arm_3L | 21205327..21205488 | 192..353 | 100 | -> | Plus |
| arm_3L | 21205882..21206062 | 354..535 | 98 | | Plus |
