FMO12159.5prime Sequence
1134 bp (1025 high quality bases) assembled on 2012-07-23
> FMO12159.5prime
CAGTCGACATGATAGCTCTGAGTGCGCTGCTAACCAAATATACGATCGGT
ATTATGAGCAACCTAAGCAATGGCAACAGCAACAACAACAACCAGCAGCA
GCAGCAACAACAACAGGGTCAGAACCCACAACAACCAGCACAGAATGAAG
GCGGAGCGGGAGCGGAGTTCGTGGCGCCACCGCCCGGACTAGGTGCCGCA
GTGGGCGTGGCAGCCATGCAGCAGCGCAACCGCCTGCTGCAGCAGCAACA
GCAGCAGCACCACCACCATCAGAATCCCGCCGCCGAGGGAAGTGGCCTGG
AGCGGGGCAGCTGCCTTCTGCGCTACGCCAGCCAGAACTCCCTGGACGAG
AGCTCCCAGAAGCACGTCCAGCGGCCAAATGGCAAGGAGCGCGGCACTGT
GGGGCAGTACAGCAATGAACAGCATACGGCGCGCTCCTTCGACGCCATGA
ACGAGATGAGAAAACAAAAACAGCTCTGTGATGTGATATTGGTGGCCGAC
GATGTGGAGATCCACGCTCACCGCATGGTGCTGGCCTCCTGCAGTCCGTA
CTTCTATGCGATGTTCACCAGTTTCGAGGAGTCGCGGCAGGCGAGGATCA
CCCTCCAGAGTGTCGATGCTCGGGCCTTGGAGCTGCTCATCGACTACGTA
TACACTGCCACGGTGGAGGTAAACGAGGATAACGTGCAAGTCCTCTTGAC
CGCCGCCAACCTGCTCCAGCTCACGGATGTGCGAGATGCCTGCTGCGACT
TCCTGCAAACTCAGTTGGATGCCAGTAATTGCCTCGGCATCCGGGAGTTT
GCCGATATTCATGCCTGCGTGGAACTTCTCAATTACGCAGAGACCTACAT
CGAGCAGCATTTCAACGAGGTGATCCAGTTCGATGAGTTTCTGACCTCTC
GCACGAGCAGGTCATCAGCCTGATTGGCAACGACCGGATTTCGGTTCAAA
TGAGGAGCGCGTATACGGTGCGTCATCGGCCTGCTGCGCTACGATGTTCC
TATGCGGGAACAGTTCACCTCGTTGCTCATGGAGCATGTGGCGTCTGCGT
TCCTGTCCAGGAGTACATTCACACACGTGGTGGACAGAGATCCCCTCGAG
GCAATATCGGTGCAGATCTCATCATTGAGCATGA
FMO12159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kel-RB | 5476 | CG7210-RB | 153..1283 | 9..1129 | 5235 | 98.4 | Plus |
| kel-RA | 5476 | CG7210-RA | 153..1283 | 9..1129 | 5235 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18137477..18137931 | 463..9 | 2275 | 100 | Minus |
| 2L | 23513712 | 2L | 18135574..18135975 | 865..464 | 2010 | 100 | Minus |
| 2L | 23513712 | 2L | 18134649..18134826 | 1040..866 | 695 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:57:24 has no hits.
FMO12159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:08 Download gff for
FMO12159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RB | 276..1414 | 4..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:09 Download gff for
FMO12159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RA | 149..1287 | 4..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:53 Download gff for
FMO12159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kel-RA | 149..1287 | 4..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:53 Download gff for
FMO12159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18134547..18134826 | 866..1133 | 92 | <- | Minus |
| 2L | 18135574..18135975 | 464..865 | 100 | <- | Minus |
| 2L | 18137477..18137935 | 4..463 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:09 Download gff for
FMO12159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18134547..18134826 | 866..1133 | 92 | <- | Minus |
| arm_2L | 18135574..18135975 | 464..865 | 100 | <- | Minus |
| arm_2L | 18137477..18137935 | 4..463 | 99 | | Minus |
