FMO12162.5prime Sequence
458 bp (458 high quality bases) assembled on 2012-07-23
> FMO12162.5prime
CAGTCGACATGGCAACCTCTTCGCACCTCAATTGGTTGATCATTCGCAAC
AACAACGCCTTCTTGTTGAAGAAGCGCGATGTGAAGAAGCCCTTCAGCAC
AGAGCCAAACAACTTGGCCAGCGTGAGCTCGTACCGCTACAGCGGCATCG
TGCACAAGAAGACCCTGGGAGTCGTGCCAGCTGCCGACAAGAAGGGCTTC
ACCGCCGTGCTGAAGAAGGGCAAGTATGCCCAGCGCCCCGCCAAGAACAC
CGTGCGTGTTGACTTCAAGGCCGGTCCCCGCCGTTCCCTGAAGAAGCTGA
AGAACCTGCTTATCGGCTCCAAGTACCGCAAGGACCTGACACAGGCTGCC
CTCCGCCGCGCTTCCGCTGTCCTGCGCTCCCAGAAGCCCGCCCCCGTCAA
GGGAAAGAAGGCCGAGTTTGCTAAGGGAAAGAAGCCCGAAGCAAGCTTTC
TAGACCAT
FMO12162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL28-RG | 851 | CG12740-RG | 346..777 | 9..440 | 2160 | 100 | Plus |
| RpL28-RF | 624 | CG12740-RF | 119..550 | 9..440 | 2160 | 100 | Plus |
| RpL28-RE | 650 | CG12740-RE | 145..576 | 9..440 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3221466..3221709 | 345..102 | 1220 | 100 | Minus |
| 3L | 28110227 | 3L | 3221188..3221285 | 440..343 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 3221881..3221974 | 102..9 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:58:00 has no hits.
FMO12162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:16 Download gff for
FMO12162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL28-RF | 113..556 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:33 Download gff for
FMO12162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL28-RE | 139..582 | 1..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:12 Download gff for
FMO12162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL28-RE | 139..582 | 1..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:12 Download gff for
FMO12162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3221467..3221709 | 102..344 | 100 | <- | Minus |
| 3L | 3221882..3221980 | 1..101 | 97 | | Minus |
| 3L | 3221182..3221283 | 345..447 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:33 Download gff for
FMO12162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3221882..3221980 | 1..101 | 97 | | Minus |
| arm_3L | 3221182..3221283 | 345..447 | 97 | <- | Minus |
| arm_3L | 3221467..3221709 | 102..344 | 100 | <- | Minus |
