FMO12163.5prime Sequence
1145 bp (1028 high quality bases) assembled on 2012-07-23
> FMO12163.5prime
CAGTCGACATGCACCAAACAGAGGATTTGAAATTAATAGATCGGCAGCTA
TCGAAAATAGCTCGTAAAAGATATAAATGGCAGGAAAAGAATAAAACTAC
GTTTGTTTTATGCACACATGGAATGGTCAACGACGACGACAAAGTCAAAC
AATGCAACCCAGAGGAAAAACAACAGCAACTTTTATCCATGATGCGGGAA
TTGCCATATTATCCGCCAAGTAACGAGATGATAGAGGCGAACACAAACCA
GGATTTGAGCGCAAATAATAGTGTGTTCGGCGATTTTATGAAGACCAAAC
GCTTGGAGTTTTACAATGTGTGCTCCGTGATGCAAACGCTGTTAACCATC
GACGATCTGTCCAATATGGAGCTATACGCCCAACTGATCCAATCTGATGT
GCCTGTGCAGCGCGTCTCCAAGCTGACATATAAAATAACTTTCAAGAGCA
CGCCCGTGAATGCAGAGGACTTTGTTGCTCCCAATCTAGACCAAGTGGTG
CTGGTGCCCAAGGCTAGCCTTCTGGCATCTCCACTACCTAAACAATTGGT
GCTGGCCTTGCTTCCGCATCCTCATGAAGATTTGGAGCCGGGCGATCCAA
TGCTTCGCCATGTGGCTAGTGTGGACAAGGTCAGCAGCACCACTGTTCAC
GTGCGCTTCAGCCGCAAACATAAAGCGGTCTTGTCAGGACAGCGCTTCTA
TGCCATTATCCGCTCCAGACGCCTTACAATCCGATACATGTATCGCGCAC
TCAATCTGCTCCAGGAGAGCCCCTTGGTGCGCCGCTACCTATTTCCGTTT
CCCAGCTGGCTGACGCAGCTTGTGGACAATTCTCAGATTAACGTATGTTG
CGACGGCCATCTGCCTAATTGGATGCAAGGAAGCCACAAGAGCCAGCTAC
TCCACCTCGCTCTCTCTTCTTATCGACCATCTATTCCAACGCTGAGCAGT
TAGAGGCCGTACACGCATTGTTGCGGGACAGTACCCAGGGACCATACATT
CTATCGACCACCAGGCACTGGTTAGACCACTACCATGTGAGCATTCTAAC
AGCTGCGCCTTTCAACACCACAAGCGTATACTCGTACGCCGGTTTCGACT
CAGCATGGAACCAATCGCCCTGAGCTTGCAGTATTTGAAGCCACT
FMO12163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6967-RC | 3410 | CG6967-RC | 106..1237 | 9..1123 | 5080 | 97.6 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 340..1301 | 179..1123 | 4230 | 97.2 | Plus |
| CG6967-RD | 3474 | CG6967-RD | 106..275 | 9..178 | 850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17063171..17064003 | 179..1004 | 3870 | 99 | Plus |
| 2R | 25286936 | 2R | 17062964..17063106 | 36..178 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:58:04 has no hits.
FMO12163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:16 Download gff for
FMO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 104..1255 | 9..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:35 Download gff for
FMO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..1257 | 9..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:13 Download gff for
FMO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6967-RC | 106..1257 | 9..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:13 Download gff for
FMO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17062880..17062906 | 9..35 | 100 | -> | Plus |
| 2R | 17062964..17063106 | 36..178 | 100 | -> | Plus |
| 2R | 17063171..17064015 | 179..1014 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:35 Download gff for
FMO12163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12950385..12950411 | 9..35 | 100 | -> | Plus |
| arm_2R | 12950469..12950611 | 36..178 | 100 | -> | Plus |
| arm_2R | 12950676..12951520 | 179..1014 | 98 | -> | Plus |
