FMO12165.5prime Sequence
1085 bp (1008 high quality bases) assembled on 2012-07-23
> FMO12165.5prime
CAGTCGACATGTTCTCCTCCAGCGCCTCGGCCGCGTCCACATCCTTCAAT
CTCGGCCAGCTGCTGCCATTGGCCATCGCCATCGGAGTGTTGCATCTGCC
GCAGTTTCTGTGTCATGCTGCCTGGACAACCAGAACGCCGGAAAGTTTCA
TTAACGATACGACCACCACCACCACCACCACCACCACCACCACAACCAAG
ACCATGCAAATCCAGGCGATGCAGGTGAACTGCAGCCGGGAGCTGCTCGA
GATGCATCTGGAGTTGAGCCGTCCCTTTCGCGGATTACTCTACGCCAAGG
ACTTTCCGCTGGAGTGTCGCGCACGTGGCAAGGACTCGACGCGTCTGCAT
CTGCGCATCCCAACATCGGGTTGCGGAGTGAGGGCAGAGCCACTGGAGGA
CGGCAGTCTGGAGTATACGGTGCGTGTGATGCTGCAAAAGGAGCAGAAGT
TGCGCCAGAGCACCGACATCCTTAGCTCGGTGAGATGCCAACTTCCGGCC
AATGCGATGGGCATGCCACTTCCGGTGTTGCGACAGGAAAAGGGTCACGA
TAGAAATGCCAGGATGCGAGCCTTGGCAGCTGCTGCTGCAGTTCCAGCTC
TCGGCGCCACTTCGTCCATCAATCAACAGCAGCGGGAGACGCCACGCGTT
AGGATCTGGTTAGAATTGGGCGGTCCCAATGGCACCGGATCCGTGGAGGT
GGGCGTCGCCACCACGCTGACGGTGAGAGCCATCGTGCCCGGAAACATCG
GAGTGCGGGTGGTGGACTGTGCGGCACTCGATGGACTGGGCGAATCCACG
CAGCAATTACTCGATGCCCGCGGCTGTCCCATCGACGAGCAGGTAATGCC
CGCTCTGCACACCCAGCACCGACCGGCGGAGAGGGTTGGTCCAAGCAGCA
CGAGAGACCTGTTCGAGCGGACGTTCGCGGCCACGTTTCCCGCCTTCAAG
TTCCCGGACGCGAGCGCTACACGTCAGCTGTGGCCGTGCACTTTGCAGGG
AATGTCCGACTCTAATTGTCGACTAAAGACCGCCTCCGCCGGCCTGGAGC
GCCGAGCACATACCTGGGCACGCACTCTAGTCAAT
FMO12165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyr-RC | 2555 | CG15335-RC | 648..1707 | 7..1058 | 4970 | 98.5 | Plus |
| cyr-RB | 2452 | CG15335-RB | 545..1604 | 7..1058 | 4970 | 98.5 | Plus |
| cyr-RD | 2378 | CG15335-RD | 648..1487 | 7..846 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8127061..8127607 | 553..7 | 2735 | 100 | Minus |
| X | 23542271 | X | 8126688..8126981 | 844..551 | 1470 | 100 | Minus |
| X | 23542271 | X | 8123222..8123371 | 984..840 | 520 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:58:07 has no hits.
FMO12165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:17 Download gff for
FMO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 540..1620 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:38 Download gff for
FMO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 540..1620 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:14 Download gff for
FMO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyr-RB | 540..1620 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:14 Download gff for
FMO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8123192..8123368 | 843..1011 | 93 | <- | Minus |
| X | 8126690..8126978 | 554..842 | 100 | <- | Minus |
| X | 8127061..8127612 | 1..553 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:38 Download gff for
FMO12165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8017225..8017401 | 843..1011 | 93 | <- | Minus |
| arm_X | 8020723..8021011 | 554..842 | 100 | <- | Minus |
| arm_X | 8021094..8021645 | 1..553 | 99 | | Minus |
