FMO12166.5prime Sequence
1168 bp (1073 high quality bases) assembled on 2012-07-23
> FMO12166.5prime
CAGTCGACATGGTGAAGATCGAGGAAGGTCTGCCGTCCAGCGAGATTAGC
GCTCACAGTCTCCACTTTCAGCACCATCACCACCCACTGCCGCCCACCAC
TCACCATTCCGCGCTCCAAAGTCCCCATCCCGTCGGGCTGAATCTCACCA
ATCTAATGAAAATGGCCAGGACACCACATTTGAAGTCCAGCTTTTCCATT
AATTCCATTCTACCCGAGACTGTGGAGCATCACGACGAGGATGAGGAAGA
GGATGTCGAGAAGAAATCACCAGCGAAATTTCCGCCCAACCATAATAATA
ACAATCTGAATACCACGAACTGGGGATCGCCAGAGGATCATGAGGCGGAA
AGCGATCCCGAATCGGATCTCGATGTGACCTCCATGTCACCGGCTCCCGT
TGCGAATCCCAATGAAAGCGATCCGGATGAAGTCGACGAGGAGTTCGTGG
AGGAGGATATCGAATGTGATGGGGAGACAACCGATGGCGATGCGGAAAAT
AAATCGAACGATGGCAAGCCGGTGAAGGATAAGAAAGGCAACGAAAAGCC
ACCTTACAGCTACAATGCCCTAATCATGATGGCCATTCGTCAGAGTTCCG
AGAAGCGTCTAACCCTGAATGGCATCTACGAGTACATAATGACCAATCAT
CCATACTACCGGGACAACAAACAGGGCTGGCAGAACTCCATAAGACATAA
CTTGAGCCTGAATAAGTGTTTCGTCAAGGTGCCAAGACACTATGATGATC
CTGGCAAGGGCAACTACTGGATGTTGGATCCCTCGGCGGAAGACGTATTC
ATTGGGCGGATCGACGGGGAAGCTGAGGAGGAGAACCACAGCCGCCTCTC
GCTCCCGACTGGCCCGCCTTCAAGAGATCCCTGATAGGACCATGTTCCCG
GGACTGGCTGCCTATCCGCAGTTTGGACAATTTCTACCTATCCTCCGACG
GCGCCTAGCTTGCTGGCCAGCATGTATCAGCGTTATAATCCCTTCGGCCC
CGAAAGGTGGACCAGGACATCCAGGCTTGCCACCGGGGCTTGCCGGGAAT
ACCCGGACCACCGGACCTCAGGACCGCCAGGACCACCACCACCGCCCTTC
GTCGCAACACCCACAGGACAGTGACTCTACAGCGAATGCAGTAATAAAAC
CGTGTGCATCCAATGGCG
FMO12166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slp2-RA | 2346 | CG2939-RA | 358..1494 | 8..1143 | 5360 | 98.6 | Plus |
| slp1-RA | 1425 | CG16738-RA | 476..726 | 555..805 | 360 | 77.6 | Plus |
| croc-RA | 2347 | CG5069-RA | 559..678 | 612..731 | 195 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3837197..3838303 | 8..1114 | 5125 | 99.1 | Plus |
| 2L | 23513712 | 2L | 3826150..3826400 | 555..805 | 355 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:58:10 has no hits.
FMO12166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:18 Download gff for
FMO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp2-RA | 356..1484 | 8..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:39 Download gff for
FMO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp2-RA | 358..1486 | 8..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:17 Download gff for
FMO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp2-RA | 358..1486 | 8..1135 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:17 Download gff for
FMO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3837197..3838325 | 8..1135 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:39 Download gff for
FMO12166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3837197..3838325 | 8..1135 | 98 | | Plus |
