FMO12168.5prime Sequence
1152 bp (1058 high quality bases) assembled on 2012-07-23
> FMO12168.5prime
CAGTCGACATGACGCGCTACAAGCAGACCGAATTCACGGAGGACGACTCG
AGTTCCATCGGCGGCATTCAATTGAACGAAGCGACCGGCCATACGGGCAT
GCAGATACGCTACCACACCGCCCGGGCTACATGGAATTGGCGCTCGAGAA
ACAAGACGGAGAAATGGCTGCTCATCACGACTTTTGTGATGGCCATCACG
ATCTTTACGCTGCTCATCGTCCTTTTCACAGATGGAGGCAGCAGCGATGC
GACCAAGCACGTCCTTCACGTCCAGCCGCACCAAAAAGATTGTCCTTCCG
GCAATGAGCTTCCTTGCTTGAACAAGCACTGCATCTTCGCCTCGAGCGAG
ATCCTTAAATCGATCGATGTGACCGTGGATCCGTGCGATGACTTCTATGG
ATATTCCTGCAATCAATGGATCAAGAACAACCCCATTCCCGAGGGGAAAT
CCACGTGGGGTACGTTCGGCAAGCTGGAGCAGATGAACCAGTTGATAATA
CGTAACGTACTGGAGAAGCCGGCAAAAAGCTTTAAGTCGGACGCGGAGCG
GAAGGCTAAGGTTTACTATGAATCATGCCTGGATGCGGATGAGCACATGG
AGAAGTTGGGGGCAAAGCCCATGAACGATCTACTGCTGCAGATCGGAGGA
TGGAACGTGACCAAGAGCGGCTACAACGTGGCCAACTGGACGATGGGACA
CACTCTAAAGATTCTTCATAACAAGTACAACTTCAACTGCCTGTTTGGCT
GGGCGATCGGTGAGGATGACAAGAACTCCTCGCGTCACGTCATCCAGATC
GATCAGGGCGGTCTGACGCTGCCCACCGCCGACTACTACAACAACAAGAC
GGACAATCACCGCAAGGTGCTCAACGAGTACATTGAGTACATGACCAAGT
GTGCGTCCTGCTCGGGGCCAACGAATCGGATGCCCGCGCTCAGATGATCG
GCGTCATTAATTTCGAGAAGAGCTGGCCAATATCACCATTCCGCTGGAGG
ATCGCCGCACGAGGAGGCCATGTTATCATCCGATGCAGCTGCGAAGCTGT
TCAAACTGGGCGCCGTCCCCACTTGACGATCACTTGACATGCCTATGCAA
ATGTGGGTCCCGTTACCGACAACCAAGTTGTTGTCTCTCAGCACCGGACT
TC
FMO12168.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep3-RC | 4528 | CG9565-RC | 305..1459 | 9..1152 | 5195 | 97.5 | Plus |
| Nep3-RB | 3546 | CG9565-RB | 167..1321 | 9..1152 | 5195 | 97.5 | Plus |
| Nep3-RA | 3537 | CG9565-RA | 158..1312 | 9..1152 | 5195 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19965196..19965513 | 409..726 | 1590 | 100 | Plus |
| X | 23542271 | X | 19965577..19965914 | 725..1059 | 1430 | 98.2 | Plus |
| X | 23542271 | X | 19964781..19964944 | 125..288 | 820 | 100 | Plus |
| X | 23542271 | X | 19965004..19965126 | 287..409 | 615 | 100 | Plus |
| X | 23542271 | X | 19963955..19964072 | 9..126 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:58:17 has no hits.
FMO12168.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:19 Download gff for
FMO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..1231 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:42 Download gff for
FMO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..1231 | 9..1078 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:19 Download gff for
FMO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep3-RA | 158..1231 | 9..1078 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:19 Download gff for
FMO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19963947..19964071 | 1..125 | 97 | -> | Plus |
| X | 19964782..19964944 | 126..288 | 100 | -> | Plus |
| X | 19965006..19965126 | 289..409 | 100 | -> | Plus |
| X | 19965197..19965511 | 410..724 | 100 | -> | Plus |
| X | 19965577..19965918 | 725..1064 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:42 Download gff for
FMO12168.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19859230..19859544 | 410..724 | 100 | -> | Plus |
| arm_X | 19857980..19858104 | 1..125 | 97 | -> | Plus |
| arm_X | 19858815..19858977 | 126..288 | 100 | -> | Plus |
| arm_X | 19859039..19859159 | 289..409 | 100 | -> | Plus |
| arm_X | 19859610..19859951 | 725..1064 | 97 | -> | Plus |
