FMO12173.5prime Sequence
1154 bp (1057 high quality bases) assembled on 2012-07-23
> FMO12173.5prime
CAGTCGACATGCTTAGAGCTAGGCGCACTATAAGTATTTTCATTGAGGAA
CAGACGGGCCTTACCCTCACACCTGAAATGCTGTTGTCCACCTCGGAATC
ATCGACCCACAGTGCCTCCGAGGTCGCCGGACGACTGCAGGTCGACGTGC
GTACCGGCCTCAAATGGACAGAGGCCAAGTATCGTGCCAAGATCATCGGG
CATAACGAGCTGCTGCTCGTGGCGGAGGATCCGACATGGAAAAAGTACAT
TGAGCAGTTTAGGAACCCGCTAATTCTGCTGCTTCTTGGTTCTGCTCTGG
TGTCCGTAATCATGAAGCAGTTTGACGACGCCGTGAGCATAACCATTGCC
ATCCTAATTGTGGTCACGGTGGCCTTTATCCAGGAGTACCGCTCCGAGAA
GAGTCTGGAGGAGCTTAAGAAGCTGGTGCCCCCTGAATGCCACTGCCTGC
GGGAAGGTCGTCTAGACACATTCCTGGCACGCGAACTGGTTCCCGGGGAC
ATAGTGCACCTCAACGTGGGCGACCGGGTGCCGGCCGACGTGCGTCTTTT
CGAAGCTGTGGACCTATCTATCGACGAGAGCAGTTTTACCGGCGAAACAG
AGCCGGCGCGCAAAATTACTGATGTTTTGCTTAACAATACGAACGTAAAG
GACCACAGCAACATGAAGAACATTGCCTTCATGGGCACTCTGGTGCGATG
TGGCAACGGGAAGGGCATAGTTGTCAGCACTGGGGAGCGCAGTGAGTTCG
GTGAGGTCTTCAAAATGATGCAGGCAGAGGAGGCTCCGAAGACGCCACTG
CAGAAGTCGATGGACATTCTAGGCGCTCAGTTGAGCTTCTACTCCTTCCT
GATTATCGGTGTCATCATGCTGCTGGGCTGGCTACAACGTAAGCCGCTTT
CGGAAATGTTCAATATCAGCGTTTCACTGGGCCGTTGCGGCCATCCCCGA
GGGCCTTCCTATCGTGTACTGTGACTCTAGCGCTTGCGTATGCGGATGGC
TAAACGAATTCAATCGTTAAAAGCTGCCTACTGTGAGACTTGGGCTGCGT
TAACGTTATCTTGCCCCTGAATAAGACCGGACTTTGACCAGAACGAATGA
CGCACGATCATCATCATTCGGACGGATACTTGCGAACGTACCGGTGCGGG
TTCC
FMO12173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SPoCk-RC | 3716 | CG32451-RC | 194..1349 | 9..1152 | 5220 | 97.8 | Plus |
| SPoCk-RD | 3742 | CG32451-RD | 258..1375 | 47..1152 | 5015 | 97.6 | Plus |
| SPoCk-RG | 3937 | CG50-RG | 283..1396 | 51..1152 | 5010 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22777108..22778125 | 51..1061 | 4650 | 98.9 | Plus |
| 3L | 28110227 | 3L | 22775327..22775371 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:58:37 has no hits.
FMO12173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:22 Download gff for
FMO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RC | 189..1330 | 9..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:53 Download gff for
FMO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RC | 194..1335 | 9..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:31 Download gff for
FMO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SPoCk-RC | 194..1335 | 9..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:31 Download gff for
FMO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22775327..22775371 | 9..53 | 100 | -> | Plus |
| 3L | 22777111..22778207 | 54..1139 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:53 Download gff for
FMO12173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22768427..22768471 | 9..53 | 100 | -> | Plus |
| arm_3L | 22770211..22771307 | 54..1139 | 97 | | Plus |
