FMO12174.5prime Sequence
1038 bp (982 high quality bases) assembled on 2012-07-23
> FMO12174.5prime
CAGTCGACATGCACTTCAGTTGGCTGTCAGAGAAAGCGCCCACGCCGCCA
GCCACCTGGGCCGATCACTCGTACTTCTTCCGTCCGCAATACTATAAGGT
GACCGTATCCGAGCGCGATCACCCGGAACGGACGCACGTTTACTTCAATG
AGACGATCATACCGGAGAACCAAGGACTAAATGGTTCAGATTTTATGCCA
TTGAATTTCAAATCATCGTTTTCAATTGTAACACATCAAGCTGAAGTCAG
AATGCCTAGCGGTAAAGTAGACAAACCCGTGATCCAGGACAACCGTGATG
GTACCGTCTCGGTGAAGTACGATCCCCGTGAGGAGGGATCCCACGAGCTG
GTGGTCAAATACAACGGAGAACCCGTGCAAGGATCTCCCTTCAAATTCCA
CGTTGACTCGATCACCTCCGGCTATGTGACTGCCTACGGACCCGGCCTGA
CCCACGGAGTCACCGGTGAGCCGGCCAACTTTACCATCTCCACCAAGGGA
GCCAGCGCCGGTGGCCTGACCATGGCCGTCGAAGGACCCAGCAAGGCTGA
CATCAACTACCATGACAACAAAGACGGCACTGTATCTGTGCAATACCTGC
CCACTGCTCCTGGCGAGTACCAGGTGTCCGTTCGCTTCGGCGATAAGCAC
ATCAAGGGATCGCCGTACTTCGCCAAGATCACCGGCGAGGGTCGCAAGCG
CAACCAGATCTCGGTTGGCTCCTGCTCCGAAGTGACCATGCCCGGCGACA
TTACCGATGACGATCTGCGCGCTTTGAACGCCTCGATCCAGGCGCCCAGT
GGCCTGAAGGAGCCCTGCTTCCTGAAGCGCATGCCCACTGGCAACATTGG
CATCTCGTTCACGCCCCGCGAGATTGCCGAGCATCTGGTGTCGGTGAAGC
GTCTGGGCAAGCACATCACAACTCACCATTTTAAGGTGACTGTCTGCAAG
CGCGAGGTGGGCGACGCCAGAAGTCAAGGTAGCGGAACTGGCTCAAGAAG
GTCAAACCCTTGCCGACAACTTCTTCTTCCGGGGATAC
FMO12174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cher-RF | 3602 | CG3937-RF | 336..1359 | 9..1027 | 4860 | 98.7 | Plus |
| cher-RH | 3502 | CG3937-RH | 247..1259 | 20..1027 | 4805 | 98.7 | Plus |
| cher-RN | 8392 | CG3937-RN | 5356..6149 | 239..1027 | 3710 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17093838..17094318 | 1027..552 | 1975 | 96.9 | Minus |
| 3R | 32079331 | 3R | 17098038..17098269 | 240..9 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 17094376..17094547 | 551..380 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 17094608..17094751 | 382..239 | 720 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:58:40 has no hits.
FMO12174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:23 Download gff for
FMO12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cher-RF | 336..1369 | 9..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:54 Download gff for
FMO12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cher-RF | 336..1369 | 9..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:33 Download gff for
FMO12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cher-RF | 336..1369 | 9..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:33 Download gff for
FMO12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17094609..17094749 | 241..381 | 100 | <- | Minus |
| 3R | 17098038..17098269 | 9..240 | 100 | | Minus |
| 3R | 17093828..17094318 | 552..1038 | 96 | <- | Minus |
| 3R | 17094376..17094545 | 382..551 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:54 Download gff for
FMO12174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12920331..12920471 | 241..381 | 100 | <- | Minus |
| arm_3R | 12919550..12920040 | 552..1038 | 96 | <- | Minus |
| arm_3R | 12920098..12920267 | 382..551 | 100 | <- | Minus |
| arm_3R | 12923760..12923991 | 9..240 | 100 | | Minus |
