FMO12175.5prime Sequence
1142 bp (1009 high quality bases) assembled on 2012-07-23
> FMO12175.5prime
CAGTCGACATGCGCAATCTGAAGCTGCGATATTGCAAGGAGCTGAATGCA
GTGGCTCATCCCCAGCATCTACTTCTTCAACCTGAACTAAATGGCGGCGC
CTCGGACATATACTTCGTGGTGGCTGATAACAAGATCTACGCGGTTCAGG
AGTCCGGAGATGTACGACTAAAAGTCATTGCCGATTTGCCGGACATAGTG
GGAGTGGAGTTCTTACAGCTGGACAATGCGATCTGCGTGGCCAGTGGTGC
TGGTGAAGTGATCCTGGTCGACCCCCAAACAGGAGCTACCAGCGAGGGAA
CGTTCTGTGACGTGGGCATAGAGAGCATGGCATGGTCGCCTAATCAGGAA
GTGGTGGCCTTCGTTACCCGCACTCACAACGTGGTGTTGATGACCAGCAC
ATTCGACGTTATAGCGGAGCAGCCACTGGACGCGGAACTAGACCCAGATC
AGCAGTTTGTCAATGTGGGATGGGGCAAGAAGGAGACGCAGTTCCACGGA
TCGGAGGGAAAGCAGGCTGCGAAGCAGAAAGAATCCGATTCTACATTCAT
CCGCGATGAACAGGAATTAAATCAGGATGTAAGCATTTCCTGGCGAGGCG
ATGGTGAATTTTTTGTTGTGTCTTATGTGGCAGCCCAATTGGGTCGCACC
TTTAAGGTGTACGATAGCGAGGGAAAACTGAATCACACAGCCGAAAAGAG
TGCAAATCTAAAAGATTCTGTTGTCTGGCGGCCTACGGGTAATTGGATTG
CCGTACCCCAGCAGTTTCCCAACAAGTCTACCATAGCCCTCTTTGAGAAA
AATGGCTTGCGACATCGGGAGCTGGTCCTTCCCTTCGATCTCCAGGAGGA
GCCGGTGGTGCAGCTGCGCTGGAGCGAGGACTCCGACATACTGGCCATTA
CGACATGTGCCAAGAAGAGCAGAGAGTGTACCTGTATACAATAGTAACTA
CCACTGGTATTTGAAGCAGTGTTGATTTTGAACAGCGATCCTCCTGCACT
GCTCATGGGACACGCGGTGGTGGAACCGAACAACCACTTCCACGTTCTTA
AGGAAAGTGCCAGGCATCCTGGTCTTACCGCTGGCATTGCCGTAAATCGA
AATATTTCATCGTGGGAGTAATGATGGTAAGCCTGTTGCTCA
FMO12175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elp1-RB | 3921 | CG10535-RB | 38..1181 | 9..1142 | 5135 | 97.5 | Plus |
| Elp1-RA | 3918 | CG10535-RA | 38..1181 | 9..1142 | 5135 | 97.5 | Plus |
| Elp1-RC | 4312 | CG10535-RC | 38..1193 | 9..1142 | 5005 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11651008..11651575 | 9..576 | 2840 | 100 | Plus |
| 3R | 32079331 | 3R | 11651633..11652134 | 573..1068 | 1925 | 95.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:58:44 has no hits.
FMO12175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:24 Download gff for
FMO12175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp1-RA | 21..1163 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:57 Download gff for
FMO12175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp1-RA | 38..1180 | 9..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:35 Download gff for
FMO12175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elp1-RA | 38..1180 | 9..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:35 Download gff for
FMO12175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11651008..11651574 | 9..575 | 100 | -> | Plus |
| 3R | 11651636..11652157 | 576..1092 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:57 Download gff for
FMO12175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7476730..7477296 | 9..575 | 100 | -> | Plus |
| arm_3R | 7477358..7477879 | 576..1092 | 95 | -> | Plus |
