FMO12176.5prime Sequence
1107 bp (995 high quality bases) assembled on 2012-07-23
> FMO12176.5prime
CAGTCGACATGTCCGCCGTGAGCCCCAACTCTTGTGTGGAGACGCCCAAG
GCGCCGGAATGGCTATCGAAGCTGGAGAGTCGTCGGGAGCAACTGAAACG
CTCCAAGCTGGGTCACGAAGCCGGAGCTGGAGCCCCCTGTGCCGAGTGCA
AGGACAAATGTCCGGGGCTGGACTTGCACTTCTGGCGCAAGGTTTGCCGC
AACTGCAAGTGCCCCAAGATTCAGCATGTGTGTCCGGACGACGATGATGC
CACTGGCTGGGCGCAGTTCGAGATTCTGGGCCAGATTAGGGCCAAACCGG
CGTATATCAAAATCAAAGCTCTGGCCAGTCAGCCCGTTCAGCTGGAGTGG
GTGCCGCCAAATGCTGCTCCGGATGTGGTCACAGATTATATGGAGAAACT
GGGCACCGCCCAAATACCTGTGGCTGGAAGCGATGCCGCGCTCAAGCGGA
AAATGCAACTCGAGTTGCAAGTGCCGCCACACGACCTGGATGCCGCACTG
TGCGATGGATTGACGGAAACGGAGGCCATCCAGCTGCAGCAATACGTTCA
GAAATTGCGAGAGCAATGCGTCGGACAGGGCGTTGTTGTGCGCCTTGGAG
ATCGTCTTAATCACGCCCAAGTGGAGCACGTAGCTCCTGCCTTGATGCCA
ACCCAGGAGGCGCAACAGACCTGGCAATCATTGGGCCTCATGCCCGTTGC
GGATGACACTTTGAACGAACTGCTTGCCAATCCCAAGGTGGCCCAGGCTT
TGGCAAGTCCTGCGAGTGCCCATCCCAAACTACTGGTTGCGTTTTCAGAG
CCTCTATGCGAATCAACAGCCCAATTCGAGGAAAACGGAGCTTTGCGAGC
CCAACTAGAGAAAAGCTGTTGGGGATTAGCAACCCGGCTCTGCTTAGCCT
TGTGACTCATGGTTATTGTCTATGACAGGTCTGGGATATTACAGGAAAAG
AAGCTTACATCCTCGAGGGATCCAAGCTTGTCCCATGCTGATTTCGCAGA
GTTGTTGAACAATTCGGCATTCCGAGCCGAGATCAAACATCTGTCTTCAG
CCGCCCATGACACCTTAAAAACACTCTGTAACATTTCATTCCATTGCCGT
GAAAACC
FMO12176.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tes-RA | 3102 | CG6522-RA | 107..1188 | 5..1074 | 4865 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17468079..17468702 | 927..304 | 3010 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17468773..17469071 | 303..5 | 1480 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:58:47 has no hits.
FMO12176.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:25 Download gff for
FMO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6522-RA | 103..1189 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:59 Download gff for
FMO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tes-RA | 104..1190 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:37 Download gff for
FMO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tes-RA | 104..1190 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:37 Download gff for
FMO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17468059..17468702 | 304..944 | 99 | <- | Minus |
| 2R | 17468773..17469072 | 1..303 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:59 Download gff for
FMO12176.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13355564..13356207 | 304..944 | 99 | <- | Minus |
| arm_2R | 13356278..13356577 | 1..303 | 98 | | Minus |
