FMO12177.5prime Sequence
999 bp (998 high quality bases) assembled on 2012-07-23
> FMO12177.5prime
CAGTCGACATGTCCTCGCTGGACGCACGCAACAACTCGGCGATGATGAAG
CGCGCCGAGCAGCTGAAGCGCTGGGAGGAGTCGGACACAAACCGCGCCGC
CCCCACCCCCCGGCACGAGCACGGCCGCAGGATCAAGTTCAGCTCCGGCT
GTGTCTTCCTCGCCGCCTGCCTTTCCGGCGACAAGGACGAGGTCGTCCAG
CTGCTCGACCAGGGCGCCGACATCAACACCGCCAACGTCGATGGACTCAC
CGCCCTGCACCAGGCGTGCATAGACGACAATCTGGACATGGTGGAGTTTC
TAGTGGAGCGAGGTGCCGACATAAACCGCCAGGATAACGAGGGCTGGACG
CCACTGCACGCCACTGCCTCCTGCGGATTTGTGAGCATAGCTCGGTATTT
GGTGGAAAATGGCGCTGATGTGGCCGCTGTGAACAGCGATGGTGATTTGG
CCTTGGATTTGGCCATCGATGTACAGCACATGGCCATGATTGACTACATG
GAGAAGATGGTGCAGGAGCTGAACATCAACGTGGATGAGGCTCGAAAGGC
CGAGGAGCTGGCGATGCTGAACGATGCCAAAAAGTGGCTGAGAAGCGATG
CCGCCGAGGTGGATAGACCGCACCCGAAAACGGGAGCCACAGCCCTCCAC
GTAGCCGCCGCAAAGGGTTACACGAAAGTGCTGGGTCTGCTCCTGGCCGG
ACGTGGCAATGTGGATCGTCAGGATAACGATGGCTGGACGCCACTGCACG
CGGCATCGCATTGGGGTCAGCGGGAGACGGCCGAGATGCTCGTGGAGTCA
CTGGCCGACATGGATATACGAAACTATGCCGGGCAGTCATGCATCGATGT
GGCCGATCGCAAATAGTCAAATTCCTGGAAGAACTGCGGGCCACAAACGC
ACAAGCGGCCGACCATCTAGTCAATAAGAATCTCAGATGCAATGGAAATT
CATGTTGAGAGACGCCCACTAAACTTGGTGCGCGTTGAAGTGAGAACTG
FMO12177.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mbs-RQ | 4482 | CG32156-RQ | 494..1487 | 9..999 | 4775 | 99.1 | Plus |
| Mbs-RP | 4003 | CG32156-RP | 494..1487 | 9..999 | 4775 | 99.1 | Plus |
| Mbs-RO | 5520 | CG32156-RO | 518..1511 | 9..999 | 4775 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16062307..16062857 | 376..924 | 2565 | 98.5 | Plus |
| 3L | 28110227 | 3L | 16053306..16053561 | 9..264 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 16062128..16062243 | 261..376 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 16063086..16063158 | 927..999 | 240 | 94.6 | Plus |
Blast to na_te.dros performed 2014-11-28 17:58:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2945..3027 | 479..561 | 118 | 65.1 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2064..2146 | 479..561 | 109 | 64 | Plus |
FMO12177.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:25 Download gff for
FMO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RJ | 452..1453 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:01 Download gff for
FMO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RO | 510..1511 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:38 Download gff for
FMO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mbs-RO | 510..1511 | 1..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:38 Download gff for
FMO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16053298..16053560 | 1..263 | 98 | -> | Plus |
| 3L | 16062131..16062243 | 264..376 | 100 | -> | Plus |
| 3L | 16062308..16062862 | 377..928 | 99 | -> | Plus |
| 3L | 16063088..16063158 | 929..999 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:01 Download gff for
FMO12177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16055231..16055343 | 264..376 | 100 | -> | Plus |
| arm_3L | 16046398..16046660 | 1..263 | 98 | -> | Plus |
| arm_3L | 16055408..16055962 | 377..928 | 99 | -> | Plus |
| arm_3L | 16056188..16056258 | 929..999 | 94 | | Plus |
