FMO12178.5prime Sequence
1147 bp (1026 high quality bases) assembled on 2012-07-23
> FMO12178.5prime
CAGTCGACATGCGATTTTCTCTGTTTACCATGCCCCACAATGCAGCTAAA
TCGGTCGAGGAGCGCAACATACCATGGAGTCAGCAAGTCGATGAGGCCTC
GTACGAAAATCTATCCTCTCCCACTCACGATGAAGTCTCTGGCAATGACA
ACTCCATGCAATTCCAATATCCGCCGTTCAACTTCAAGGAGAATTGCAAC
ACTCCATGGAACAATATGAACAAGGGCCGAAAGGCGAACGCCAACCATGA
TTCATATAGAAGACATGGTCATAGTATTCCCAATAACACACGACGCGACG
AGCACCAAGTAAATCCTTGGAATTCCAGGAAGCCAGCAGCACAGTCGTTT
CGAAATGAAAACGATCAGCCGTCTACAAAACTGGACAACAGAACAAGCGA
TGAAGCACAAAATCAAGAAGTTGTCGCCGCTCCCAAGAAGACAACCTGGG
CCTCGATTGCCTCCCAGCCAGCCAAACTAACATCGAGAGCAGCGTCCACC
ACTTCCAACAGCAAGAAGAAGGGTCCTGGCATGCCACCACCACCCATGGT
TCCGGGAAAGCACAATTTAGATGTTAACGTATGGGATTTGCCGAATAACA
AACCACCTCCTGTACCATCTCCACCCTCGCCGATCGATTTGGGCTATTCC
GACTTGAGTTCTGACTTCTCCATATCGAGCAACACGGCACCGCCATTGGG
CGCACGAGCCGAGAAAGTGCACAAGGATACGGAGAACTTCCTGAAATACG
AGCACAAAGGGCTTGGGAAATAACAATAACTTCAGCAGAGCCAAGGTTTC
GCCCACGGGACCTGTTCGCAGAATCTAGGGCCCCAGCAGCCTGTCCACCA
TGCCGCCCCACGTCCAGCGACCAATGCCGGTCCATTTGGGCCACCGAACG
CCAGACGACACGACGGCGGGCCGCATCCAAGCCGGAACTCGGAGCGCTCG
GGCAACTATTCCAGTTTCGCGGCAGCGAGTTTGAGAGTGCTTCGAGTTCG
ATACGCGACGAGACCAATCACGACCGGGGTAGCACATCTGCACCGAAGAG
CTGCCTGTCGATCCCACCTCGTGTTGACGATTAAAGAACAAACAATTACC
AACCCAAAAGGGTGGGACTGAAAAGCGGAATCGGCGATTCTTTTTGT
FMO12178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6422-RB | 2832 | CG6422-RB | 296..1447 | 9..1143 | 5160 | 97.6 | Plus |
| CG6422-RD | 2862 | CG6422-RD | 360..1477 | 43..1143 | 4990 | 97.5 | Plus |
| CG6422-RC | 2616 | CG6422-RC | 114..1231 | 43..1143 | 4990 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25035735..25036331 | 1076..489 | 2420 | 97.2 | Minus |
| 3R | 32079331 | 3R | 25036392..25036538 | 489..343 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 25038420..25038553 | 142..9 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 25038211..25038319 | 249..141 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 25036623..25036718 | 344..249 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:58:55 has no hits.
FMO12178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:26 Download gff for
FMO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 292..1379 | 9..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:03 Download gff for
FMO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 296..1383 | 9..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:40 Download gff for
FMO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6422-RB | 296..1383 | 9..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:40 Download gff for
FMO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25035718..25036331 | 489..1091 | 97 | <- | Minus |
| 3R | 25036393..25036536 | 345..488 | 100 | <- | Minus |
| 3R | 25036623..25036717 | 250..344 | 100 | <- | Minus |
| 3R | 25038211..25038318 | 142..249 | 100 | <- | Minus |
| 3R | 25038421..25038553 | 9..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:03 Download gff for
FMO12178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20861440..20862053 | 489..1091 | 97 | <- | Minus |
| arm_3R | 20862115..20862258 | 345..488 | 100 | <- | Minus |
| arm_3R | 20862345..20862439 | 250..344 | 100 | <- | Minus |
| arm_3R | 20863933..20864040 | 142..249 | 100 | <- | Minus |
| arm_3R | 20864143..20864275 | 9..141 | 100 | | Minus |
