FMO12179.5prime Sequence
1112 bp (1018 high quality bases) assembled on 2012-07-23
> FMO12179.5prime
CAGTCGACATGGCAGAACCCCGTCCCGGCGGCTACAACTACAAGACATTA
TTATGCAGAAACATTCCGGAGCTATTTTTGGACAAATATGTGGCGCGTTC
GCACTTTGGACGTTTTGGAACCCTCGTAAACTTCGTCCTGCGTCCGCGGC
GAATGACCTGCACCGTAAGCTATGCCAGCGAGGACGAGGCGGCGCGGGCG
CTTCTCGATGGCGCCAGCTTTCAGGGTCACCTGTTTGATATATCCTATGC
TGATAACGAGACGGCGCCGGCACAGAAAACGGAGGAGTGGGTGGATCCTG
ACATTCAGGCGGAGTTGAGTGCACTGCAGTCGGGCTGGCGCAATGAGTAT
GGGTCGGGCAAGCCGATAAAAAAACCACAAAATGGCAGCAGTGGTAGCGG
TGGCAGTTCAATGCTGCCTGCCATACCAGTTGGGCCCGCAACGGCGCCGG
TGAGCAGAGATCGTACGCCTGCCCAGCTCAGGGATCTTGAGAACATGATG
CGCAGACCCGCCCATACAAGCGAGGAGAAGTTCAGCGTGCTGGATGCCCG
CGATAAGCTGCTCCGGTTGAACCGAACGCAACACAAGCTGTCCGGTGCCA
CCCAGGGTCACTGCGCCGATATGTGTCCGGAAAAGGAGCGCGTGCTGAGA
GAATTCCAGCGCCAGGTAGCCTACTATGAACTACAACCGGGCTCCGATGA
GCTAATCTGTCACGAAAGAGCCCTGAAGCAGTACTCGCGCAGCAGTGCCG
ACCAGGAGACGCCACTGCCGCATGAACTGCGCAATGAGACTGCCCTGCAC
ATGACCATGAGCTATCTAATGCATGAGATCATGGACATTAGCGAGCGCCA
GGATCCGCAAAGCCATATGGGCGATTGGTTCCACTTCGTTTGGGATCGCA
CGAGGTCCATCCGAAAGGAGATCACCCAGCAGAGCTATGCTCTCTGGGCC
GCTGTGAAGCTGGTGGAGCAGTGCGCCGGTTTCCCATTCATTGCGCCGCC
CGTCTGATGACGCGATCCCAGCGTCTTTGACAGGCAGATCCACGCCGAGG
ATCTAACAATGCCTTGCCGAACTCTTGAGTACATTGTACATGACCTGCGA
TTAAGGGCGTTC
FMO12179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| xmas-2-RA | 5073 | CG32562-RA | 93..1200 | 9..1112 | 5135 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17158099..17159106 | 1057..53 | 4705 | 98.9 | Minus |
| X | 23542271 | X | 17159171..17159214 | 52..9 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:58:57 has no hits.
FMO12179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:27 Download gff for
FMO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| xmas-2-RA | 83..1200 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:06 Download gff for
FMO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| xmas-2-RA | 83..1200 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:41 Download gff for
FMO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| xmas-2-RA | 83..1200 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:41 Download gff for
FMO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17158043..17159106 | 53..1112 | 98 | <- | Minus |
| X | 17159171..17159218 | 1..52 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:06 Download gff for
FMO12179.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17052076..17053139 | 53..1112 | 98 | <- | Minus |
| arm_X | 17053204..17053251 | 1..52 | 92 | | Minus |
