FMO12180.5prime Sequence
1063 bp (1030 high quality bases) assembled on 2012-07-23
> FMO12180.5prime
CAGTCGACATGCCGACCATCCGGCGGTGCTGCATCATCGGATGCTTGTCC
AATTCGCGTCAGCACCCGAGTATGCAGTTCTTTGCGTTTCCCCGGCCGGA
GAACCCCTTCCACAAGCTGTGGAAGGAGGCGTGCCACGCCTCCCTAAGAC
GAATTGTGCCCTTCAAAAAGCCAGTGGTATGTGCCCTGCACTTTGACCCC
AGTGTCTTGGGTGGCAGGCGACTGCAGTCGAATGCGCTGCCCACCCTGCG
TCTGGAAGTTCCCTCCAACCTGGAGGCCGTTGAGCAGCAGGCCATGGTGG
AGGAGATCGAGAGGAGCCGAAAGTGCGCCTACATCAATGCAGTGGTATAC
GAATGGCTAGTAAGGGCCAATATCAATCCCCAGCTGCGAGGTAGCATTAC
CCACGGAATGATCAAGGACAAGGCGGAGAATGCCAGACAAGTCATTGGGA
GCACATCCTTTATAGCAGACAATCGCTGGTTAAACCGTTTCCGAGAGACT
CATCTTCAAGGCTTTGCCCAAAAACTAGCCAGCAACCAGTTGAAGCCACT
AGGATCCTCCCTGTGGATCCCGGACATCGTACAGGACCTAGCCCATCTCT
TTCCGCCCGCGAGCGCTGAAAGAGTGGCCAAACTGGAGGAGATGCCCGAG
CAGTACATGACCTACATGCAACAGTACGGAGAATACGAAGAAGATGATGA
CAGTATGGATGTAAAGGAGCAGAGCTATCAAGAGCAACAGCAGCAGCAAC
AGCAGCACTTTGCCCTCCAGCAGCAACATATGCAACAGCAGCAGCATCAA
ATGGGCCACCCATGGCCACCGTTTCCAGGACATCCCGGACATCCTACTCC
ACACCCCGGGTTCGCCAGCTTCAACGACTTTATTTCGAGCGGCATCAACA
GCAAATGCAACAGCACTCCAGCAGCAGCAGCAGATGCAACAGTTTCCACC
CACTATGCCACCTCAAAGGAACCCTTTCAGCCCCAATTGCCGCCAAATGT
CCACGCAACGGGCCAGTCCCTCCAGCCCGTTCATGGCCCAAGAGACCCAA
TATGAGTCACCCG
FMO12180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13894-RA | 2193 | CG13894-RA | 401..1469 | 3..1063 | 5055 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 693817..694875 | 1054..3 | 4860 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 17:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6944 | 718..928 | 233 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2369 | 888..942 | 151 | 76.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1593 | 888..955 | 146 | 72.5 | Plus |
FMO12180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:27 Download gff for
FMO12180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13894-RA | 397..1468 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:08 Download gff for
FMO12180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13894-RA | 398..1469 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:44 Download gff for
FMO12180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13894-RA | 398..1469 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:44 Download gff for
FMO12180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 693807..694878 | 1..1063 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:08 Download gff for
FMO12180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 693807..694878 | 1..1063 | 98 | | Minus |
