FMO12181.5prime Sequence
1112 bp (1007 high quality bases) assembled on 2012-07-23
> FMO12181.5prime
CAGTCGACATGGTTTATTTCGGCGATCGGCAACGCGATCGCAATCGCGAT
CGGAGTAATCAGAAAGTCGAGCGAATCATTCACGATGAAGAGTTTGGCGA
GGAGAACGTCGAGTTGGTGGACTCGGAGTGGGCGGACTTCGAGAAGTTCA
TTTGCCAGTTGCGCAAGCGGCGGAACAGTGCTATGTCCATGGAGGAGGAA
CTGCGTCACGTGCAGCGGCATCCGAAGATCAAGTCGCACGCCTTCTATCC
GTGCCCGCCGCCAGCTGAAAATGCTCGGGATTCGGACTCCTCGGACGATG
ATGATCCCATCGGATACATCGATACTCTTATGTATGGTCGCTATACCAAA
GATCTAGGAGAATTTGCCAAGGATGAAGCCAGAAAGCTCAAAATACTCGA
AAAGCGACGAAAGCAGGAAGATAAGCAAAGGAATAAGGAACTGCTGGGCA
AACATTCGACCCGGGCGAAGCGGGTATCATCATGGATCTGGAGGCACACG
GTGGCCCGACTGGGCGAGGATTGGGTATTCCTGGCCCTACTGGGCATCAT
TATGGCCCTGCTCTCGTTCATCATGGACAAGGGCATATCCATATGTACAA
ACGCGCGAATTTGGCTGTATCGCGATCTGACGTCACAGCCTTTTGTTCAG
TACATCGCATGGGTCTCACTGCCGGTCTGTTTGATATTGTTCTCAGCCGG
CTTTGTCCATCTCATCGCACCGCAAAGTATAGGTTCTGGTATACCCGAAA
TGAAGACCATACTGCGCGGCGTTCAATTGAAAGAGTATCTCACATTTAAG
ACACTAGTGGCCAAGTAATTGGTTTAACGGCAACTCTGGGCAGCGGTATG
CCATTAGGAAAGGAAGGTCCTTTCGTACATATAGCAAGTATTGTAGCACA
ATTATTTAAGTAAACTTGTCACATCATTCCCAGGCATATTATGAGATTGA
GTCGCGAACTCTGAATGTTGGCGCAGCCTGTGCTGTCGATGTGGGGCGCT
GTTTTGCCGCTCCAGTCGTGGTGGTGCTCTTCCGCATAAAGGTCACCACC
ACGTACTTCCTGTGCGTAATCAATTGGCCGCGAATATCTTTGCTGATCGG
GTGTGGGCGCCA
FMO12181.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-a-RF | 3613 | CG31116-RF | 215..1278 | 9..1069 | 4990 | 98.5 | Plus |
| ClC-a-RD | 3994 | CG31116-RD | 215..1278 | 9..1069 | 4990 | 98.5 | Plus |
| ClC-a-RC | 3972 | CG31116-RC | 894..1637 | 329..1069 | 3390 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11806033..11806353 | 329..9 | 1605 | 100 | Minus |
| 3R | 32079331 | 3R | 11802170..11802337 | 603..436 | 840 | 100 | Minus |
| 3R | 32079331 | 3R | 11801950..11802081 | 734..603 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 11801159..11801296 | 866..730 | 640 | 99.3 | Minus |
| 3R | 32079331 | 3R | 11802583..11802691 | 438..330 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 11800875..11801028 | 1018..866 | 440 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:59:04 has no hits.
FMO12181.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:28 Download gff for
FMO12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RF | 205..1283 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:10 Download gff for
FMO12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RD | 211..1289 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:45 Download gff for
FMO12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-a-RD | 211..1289 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:45 Download gff for
FMO12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11801160..11801293 | 733..865 | 99 | <- | Minus |
| 3R | 11801952..11802080 | 604..732 | 100 | <- | Minus |
| 3R | 11802170..11802335 | 438..603 | 100 | <- | Minus |
| 3R | 11802584..11802691 | 330..437 | 100 | <- | Minus |
| 3R | 11800868..11801028 | 866..1022 | 92 | <- | Minus |
| 3R | 11806033..11806357 | 1..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:10 Download gff for
FMO12181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7627674..7627802 | 604..732 | 100 | <- | Minus |
| arm_3R | 7626882..7627015 | 733..865 | 99 | <- | Minus |
| arm_3R | 7626590..7626750 | 866..1022 | 92 | <- | Minus |
| arm_3R | 7627892..7628057 | 438..603 | 100 | <- | Minus |
| arm_3R | 7628306..7628413 | 330..437 | 100 | <- | Minus |
| arm_3R | 7631755..7632079 | 1..329 | 98 | | Minus |
