FMO12182.5prime Sequence
885 bp (885 high quality bases) assembled on 2012-07-23
> FMO12182.5prime
CAGTCGACATGCTGCACCTGACGGGCCAGAGTTACAATGCTCGCGACATC
ATCCGGAACATCTTCTCGCCGCTGATCGGCGTGCTGTCCAGTCCACAGGC
GGACGAGATTTGCCACCGGAACAACCTCTCCTTCGTGGAACTCCTGCAGC
CGTTCGCAAAGTTGCCAAATGATGCACACTTTCGCGACGTGTCCGGAACG
AGTGTATCGGTGCGTGGACTCCGTCTCAATTTCTGTGATGTGGACTGGCG
GCCGCCGCAAACAATTTTGGCCAGGAAGATGCTCAACGAGTCTGTGACCA
ACGCCCATAATGACAAAACCAGACTGGCCACCATAGCTGGCATAGACCTT
GAGTTACCCACATCGGAACCATGGTTCGAGCAGTGGCGTGAGACCTTTTT
AACTGTGCAATTTCCGGCGGATCATGAGTTCACCCGCCATCTATTAAGTT
GTTTGCTAGTGCTATCCAGCGCAGATCCCCAGATCGTGGAGACGGCCCAC
AAACTGGGACAACGTGTGCAGCAGATGCAGAGCATCACGCCCCAAAAACT
GCCCAAGTGGTTCCATCCCACCGAGGTCCTCAATAGTTACGTAGTGCTGC
ACGAGGCTAGCCAGGGAGACTTGTCCAAAGCACAGCAGGGATTCGAGCTG
CTCAAATCCACGTTCGGAGACAGCAAGTGTTTTTTGGTGTCGATCAACTC
GATGGATTCTCAGGGTGCAGCTGAGGTTCCAGATCACTGGGCCAACGTTT
ATTAAAAGACAGCCTAAAAGTGATCCAAATCTACCCTCCAACTGATCTTA
GTGCACCGAAATCGCCACAGGGAAGCGGTTTCTGTAATAAGTATGCTTGC
TATGCAAATGTCACAGCTCCTGGAAAGGAGTCAGT
FMO12182.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)76BDm-RB | 4347 | CG8793-RB | 77..949 | 9..885 | 4255 | 99.3 | Plus |
| l(3)76BDm-RA | 4094 | CG8793-RA | 77..949 | 9..885 | 4255 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19617229..19617770 | 875..331 | 2545 | 99.1 | Minus |
| 3L | 28110227 | 3L | 19618280..19618445 | 174..9 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 19617824..19617986 | 336..174 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:58:25 has no hits.
FMO12182.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:20 Download gff for
FMO12182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)76BDm-RA | 68..945 | 1..885 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:46 Download gff for
FMO12182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)76BDm-RA | 72..949 | 1..885 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:24 Download gff for
FMO12182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)76BDm-RA | 72..949 | 1..885 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:24 Download gff for
FMO12182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19617220..19617764 | 337..885 | 98 | <- | Minus |
| 3L | 19617824..19617985 | 175..336 | 100 | <- | Minus |
| 3L | 19618280..19618449 | 1..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:46 Download gff for
FMO12182.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19610320..19610864 | 337..885 | 98 | <- | Minus |
| arm_3L | 19610924..19611085 | 175..336 | 100 | <- | Minus |
| arm_3L | 19611380..19611549 | 1..174 | 97 | | Minus |
