FMO12184.5prime Sequence
1114 bp (1015 high quality bases) assembled on 2012-07-23
> FMO12184.5prime
CAGTCGACATGAACAATTTGGACAGTTCATTGCAGGCGCACAATAAATTG
GAGAAGGAAGCCACCAATTTAGCTCTGCTGAAAGATCGAGTGGATAAATA
CCATGATCTGTCCACGCAAATGTCCAGTATTCTAACAATCTTCGAGAAGC
GCCTGGGAAACCTGGAGCAGACCATATTGCCCGTCTACCAGGAGACGGAG
CAGCTCCAGAAACGGCAGCAGAATCTGGAAGCTACTCTCAATTGTCTGGA
AAGCGTCCTGTCCCACTACGATGTCTCCCAAGAGGTCTGCCAGTTGATTC
ATCAAGGCCCGGTGGAGGGAAACATCTCGGTGTTCCTCGACGCACTAGCC
AAACTGCGCGATGCCAACGATTACTTCCGGCACAACAATTCCCAGAGCGT
GGAGCTGGAGAATGTCACCAGTTTGTTTAACACCGGCTGCGAAGGCCTGA
GTCAGCACTATAGTATGCTCCTCAAGAAGCACAGTGCTCCGCTGAAGCCG
GTGGAGTTGCTGGATCTTATCTACATAGAGGACGATTCCAGCGATGAATA
CACCTCATTCCGGCAGCTTTCGCAAACGACGCGCGAGGAGCTGTACACCA
TATCGCACTGGTTGGAGCAAAATTTAAGGGAGTACACAAACATCTACGCG
ACGGAACGGGGCGAAGTGGTTCTCCGATCGCTGCAGCTGCTCAAGGATCA
CCAAAAGAGCAACAGTTGGGGTCACGAGGCTCTGAGACCGCGACACAGTG
GACGCCAAACGGAGCCAAAAAAGACAACCTCCGCTCGTCTTCAGCAAATA
TTCGAAAAGAAGGCGAACAAGTTATATTTACGCGCGACGCAGACGATTGA
GCAGTCCACAGGGTTCTCCATTAAGAAGCATCATCGCACAGCGACCACCT
GACCTCCGAGGATTTGATGGATGGCGATCAGACTGGACAGTATCTGGTCA
TGTGCTGGGACTGCAGCGTACTAACTGGGAGCGGAGCCATCATGATCGAC
ATTATTCCCAGTCGAACACAACGAGGTATTCGCCACTGCTATAATGCATC
GATCTGTTGTTTAGACGCTGAGCATACGCACGCATCTGGCCTGCATTCGG
CAGATGTAACTCCG
FMO12184.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Exo70-RA | 2284 | CG7127-RA | 111..1220 | 9..1097 | 4980 | 97.6 | Plus |
| Oseg1-RB | 4766 | CG7161-RB | 17..528 | 734..223 | 2560 | 100 | Minus |
| Oseg1-RB | 4766 | CG7161-RB | 599..766 | 222..55 | 840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8412298..8412809 | 223..734 | 2560 | 100 | Plus |
| 3L | 28110227 | 3L | 8412060..8412227 | 55..222 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 8414335..8414590 | 790..1036 | 760 | 94.6 | Plus |
| 3L | 28110227 | 3L | 8414217..8414282 | 734..799 | 330 | 100 | Plus |
| 3L | 28110227 | 3L | 8411961..8412009 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:58:32 has no hits.
FMO12184.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:22 Download gff for
FMO12184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exo70-RA | 109..1160 | 9..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:50 Download gff for
FMO12184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| exo70-RA | 111..1162 | 9..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:29 Download gff for
FMO12184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Exo70-RA | 111..1162 | 9..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:29 Download gff for
FMO12184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8414345..8414605 | 800..1047 | 94 | | Plus |
| 3L | 8411961..8412008 | 9..56 | 100 | -> | Plus |
| 3L | 8412062..8412227 | 57..222 | 100 | -> | Plus |
| 3L | 8412298..8412809 | 223..734 | 100 | -> | Plus |
| 3L | 8414218..8414282 | 735..799 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:50 Download gff for
FMO12184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8405061..8405108 | 9..56 | 100 | -> | Plus |
| arm_3L | 8405162..8405327 | 57..222 | 100 | -> | Plus |
| arm_3L | 8405398..8405909 | 223..734 | 100 | -> | Plus |
| arm_3L | 8407318..8407382 | 735..799 | 100 | -> | Plus |
| arm_3L | 8407445..8407705 | 800..1047 | 94 | | Plus |
