FMO12185.5prime Sequence
1110 bp (1018 high quality bases) assembled on 2012-07-23
> FMO12185.5prime
CAGTCGACATGTCACCCAAGGACGGCAGCCTGGGCGATGCTAAATTCGCC
AAGTATACGGTGAACCATGAGCCGCCACCTCCTTCGGCGATGACGACGAC
ACAGTCCACCAACAGTGGTGTGGATAAACCGATAGCTAAGGAAAAGGACA
ATGGCACAACGAATCCGCCCGTGAAACGATCCTGGCGCGAGAAGATCCGC
CTGGTGGCCAACAATGTCACCGTGGAACCGATCCTGGCCGCCTACATCAT
GCCCAGCGTGCTCTCCAATCTGGCCACCCAGAATCTTAACCTGGAGAAGG
CCTGTCGAGTGAACATGGCCTACGGGGATGAGGTGTGCGATGCACTCACC
CGCCGCCAAACAGCCAACTACACACTAGAGGAGGAAACAGTGCAGCAAAT
GGTGGCGCGAATGGCCGCCTGGAAGACGGTGATCCAGTCCCTGTTCCCCT
GCCTGCTGATCCTTTTCTGGGGATCCTGGAGCGATCGCCATCGCCGGCGG
AAGCCCTGCATCCTCATCCCGGTGGTGGGCGAGTTCCTGGGGGTGGTGGG
CCTGATGCTGTGCGTCTACTTCGAACAGGCGCCCATGGAGGCAGCCGCCC
TCACGGAAGCCATCTTCCCCTCCCTCAGCGGCGGCTGGTTCACCATGCTG
ATGGGCGTCTTCAGCTACATTGCGGACATCACCACGGAGGAGGATCGCAC
GCTGAGGATCGGCATTCTCAATGTCTGCTTCTCGGTGGGCGTGCCGATCG
GAATGGCCTTCAGTGGAGTGCTGCTCAAGCAAATTGGATTCTACGGCGTA
TTCTCGATCTCCGCCGCCTTCTACGTGATAGCCTTCGTTTACGGCTTCTT
TTTCCTGGAGGAGCCACAATCTCGGCCGGAGAAAGTGCGGAGCAAAAGAG
CCTGCTGGCCGACTTTTTCGACAGGAGCACGTGTGCAGACATTCCGGGTG
GCCTTCAGAAGGCGAAATCAGCGCCGCAAACGCGTGATCCTGCTGATGAT
CGTGTGATGTCATCATTGGTCCACTTGCACGCAGATGCAGTCACGTATCT
ATTCCCGCGATTCGTTCATTTCGAAAGTGAGTTAGTTCTCTTCGACTATG
CCATGTTTAA
FMO12185.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15890-RB | 2702 | CG15890-RB | 387..1506 | 9..1109 | 5040 | 97.8 | Plus |
| CG15890-RA | 2705 | CG15890-RA | 390..1509 | 9..1109 | 5040 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14759244..14759646 | 779..377 | 2015 | 100 | Minus |
| X | 23542271 | X | 14759998..14760365 | 376..9 | 1840 | 100 | Minus |
| X | 23542271 | X | 14758843..14759137 | 1063..779 | 900 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:59:18 has no hits.
FMO12185.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:31 Download gff for
FMO12185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15890-RA | 383..1509 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:19 Download gff for
FMO12185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15890-RA | 383..1509 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:53 Download gff for
FMO12185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15890-RA | 383..1509 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:53 Download gff for
FMO12185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14758787..14759137 | 779..1110 | 92 | <- | Minus |
| X | 14759245..14759646 | 377..778 | 100 | <- | Minus |
| X | 14759998..14760369 | 1..376 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:19 Download gff for
FMO12185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14652820..14653170 | 779..1110 | 92 | <- | Minus |
| arm_X | 14653278..14653679 | 377..778 | 100 | <- | Minus |
| arm_X | 14654031..14654402 | 1..376 | 98 | | Minus |
