FMO12186.5prime Sequence
746 bp (503 high quality bases) assembled on 2012-07-23
> FMO12186.5prime
CAGTCGACATGGACTTCGATCAGATCCTGGCCAAATGTGGCGACTTTAAT
CGCTACCAGTTCATGATACTCGCCCTCTTCGGGTTCATTAATATCATCGT
ATCGATGCATTACTTTACGCAGACTGTCATTAGTTTTGTGCCAGATCACT
GGTGCTATCATGATAAGCTTGTGAATATGACATATAAGGAGATCGGTGAG
ATCTACGCTCAGTTCGAGAATCCCTCGTGCACCCGACTGGATGACATCAA
TGGCCACAATGTCACCGTTAGCAGCAAAGCCTGCGAGAAATGGATCTACA
ACTATGATTTCGGCTATAGAAGCATGAACACAGAGCTTAACTGGGTCTGC
GACTCGGCGTACAAGGCACGTATTGGGCCAGTCTCTGTTCTTTATTGGGC
TCCGTGGTGGGCACACTTTTCTACGGTCTGCTTTCCGATAAGATTTGTCC
CGTGTTCCCGCCCCTCATCTTTGTCCAAACTTCTGGGGCTTTGCCGGGCG
ACTTTTCTTTACCATTTTCAACCAAGAGCGTGGCCCACCTTCACCCCTCC
TGCCGTTTTATTTTCCGGGCCTGGCAAGCGGACAAACAAACTTTCTAACT
GGATGGAACAATATTAGTTCTTCGAAAAATATTTCCAACCCAAGCATGAA
AAACCCTGGGGTCTCAAACAATGGGCCGGTGGGTCTGGTTCTACTGGCCT
GGGGCCTGGGTTTTTCACTTCCTTGGGCTGGGCAGATCCTGGGTGG
FMO12186.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6231-RF | 2730 | CG6231-RF | 357..1036 | 7..726 | 2500 | 93.1 | Plus |
| CG6231-RE | 2720 | CG6231-RE | 347..1026 | 7..726 | 2500 | 93.1 | Plus |
| CG6231-RA | 3096 | CG6231-RA | 723..1402 | 7..726 | 2500 | 93.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19618796..19619024 | 335..107 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 19619085..19619185 | 107..7 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 19618545..19618735 | 535..334 | 485 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:59:22 has no hits.
FMO12186.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:32 Download gff for
FMO12186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RC | 575..1166 | 1..614 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:20 Download gff for
FMO12186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RA | 717..1308 | 1..614 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:55 Download gff for
FMO12186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6231-RA | 717..1308 | 1..614 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:55 Download gff for
FMO12186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19619085..19619191 | 1..107 | 97 | | Minus |
| 3R | 19618796..19619023 | 108..335 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:20 Download gff for
FMO12186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15444807..15444913 | 1..107 | 97 | | Minus |
| arm_3R | 15444518..15444745 | 108..335 | 100 | <- | Minus |
