FMO12189.5prime Sequence
1071 bp (1001 high quality bases) assembled on 2012-07-23
> FMO12189.5prime
CAGTCGACATGATGAGCTTCACCATTACCTTGGCGCTACTGCTCCTGGCA
GTTCTGATCCTGGGCATCTTGTTCGCCTGCCACTGTCTTGGTCCGCGGGC
CGCCAACTGGATGCGTATGCGATCCAGCAAGGAGGAAAAGATCGGACTAT
CCAATCACAAGCAAAAGCTCTTCCATGCCAATGGTTATATGGCCAGTATA
CAATCCGGCTCCGAGTTCCTGCTGAGCACCAGTGGTAGTTTCAAGCGTTT
CGATACCATCGACAAGGAGGACTACAATCGCTCCCAGCAGACGCATCAGA
CGCATCTGTTCCTGATGAACGGCGGCGGTGCGGTTTCGATAACCGGATCA
TCCAGTGCCCTGCAGGCCACCACGGCCATGTGGCATCTACCGCGTTCGGG
TATTAAGATTCCACCACCGCCCGATCGACCAGCTCCATCTCCGAATAGTG
CTGCAGCAGCCGGCAAAACGGTTACCTTCTCTTTGAGCCAGGTAAACGAG
GTCATCATGCCCGGCGAGCAGGTGACATCCAACGATCAGGAACGTCGCTC
CTGCCTGCGACAAAATGGTGGAACTGCGGGCGGTGCTGGCGGCGGTGGTG
TGCTGCCGCAGCCACTGGAGGCACCACCTCCGCCACGACTCACCGCATCG
ACGTCGGTGAACTTATCGGGTACGGCGATTCCAAGGCCCATTGCCAAGCG
GCAAGTGTCCACGCAGCCGGCCAACAATAGCGGATGCCAGCCGGAGCAGA
CCGTGGTGACCCCGATGCGGGAGGGTGAGAGAAAAGCGCCTGCCTTGAAG
CGTAGAAACTCCAGCACTAATCCCTTTCCTGTGCGAATCAACGGAGCAGA
TACCCAGTATCCCATTTCTGAACCTCTGAATGCCACGGTGGCTTCTCTGG
AAAAAACGACTATTTCAACAGTGATTGTACTCCTATAACTGCTTCCTCCT
AAAGACTCCGAATGGGCCTTATTCCACCGGAATACCTCCATCCACCAATA
CATTACAATGCATCCTTTCGTGGAAGAAAGAAAGTCTTGTCAGCACGACT
CTGAATAATCCTATAACCACA
FMO12189.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt12-RA | 4823 | CG10617-RA | 242..1266 | 9..1037 | 4745 | 98.1 | Plus |
| Syt12-RB | 4820 | CG10617-RB | 239..1263 | 9..1037 | 4745 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13363584..13364354 | 198..969 | 3580 | 98.7 | Plus |
| X | 23542271 | X | 13363292..13363480 | 9..197 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:59:28 has no hits.
FMO12189.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:33 Download gff for
FMO12189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt12-RA | 231..1272 | 1..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:24 Download gff for
FMO12189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt12-RB | 230..1271 | 1..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:59 Download gff for
FMO12189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt12-RB | 230..1271 | 1..1045 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:59 Download gff for
FMO12189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13363283..13363480 | 1..197 | 97 | -> | Plus |
| X | 13363584..13364340 | 198..954 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:24 Download gff for
FMO12189.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13257316..13257513 | 1..197 | 97 | -> | Plus |
| arm_X | 13257617..13258373 | 198..954 | 98 | -> | Plus |
