FMO12190.5prime Sequence
1145 bp (1006 high quality bases) assembled on 2012-07-23
> FMO12190.5prime
CAGTCGACATGGCCAGCACCACTGGAAGTGCCCCCAGCCTGGGACCCCCC
CAGAGCGGGAGTGGTGGCTCTGGCACATTGGAGGGCACGCTAAGCAAGTG
GACGAATGTGATGAAGGGCTGGCAGTACCGCTTCTTCGTTCTGGACGAGA
ATGCTGGACTGCTGTCCTATTACACGTCGAAGGATAAGATGATAAAGGGC
GTGAGGCGCGGTTGTGTTCGTTTAAAGGATGCGCTAATCGGAATCGACGA
CCAGGAGGACAACACATTCACAATCACTGTGGACCATAAGACCTTCCACT
TTCAGGCGCGACACAACGAGGAGCGGGAGCAGTGGGTGCGCCGCCTGGAG
GACACCATTCGACGCCACGCGAACCGGTCGCGTCTGTGGGACAGCCAAAG
CGCTTTCTACATCGCCGGTGGCTACACGAAGGAAGGGGGCGGGATCGGAA
CAGGCGGCAGAAGACCCAACCACCTGGAGTTGGTGGCGCGCCGTGTTTCC
GAGGCAGATGCCTACCTCCAGCTGATGATTGAGCAAACGAACTTACTGGA
CAAACGCATCGCGGAGCTGACCGATCCGGCGGAGCAGTCTAAGTGCAAGG
CACTCCAGGACAACGCAAATGCCATGCTGGATCACATTAAGCACTCGATT
GTCAGCCTGCAGATTGCCAAAAACATGGCCCACCCAATAAATGGAATCTA
CAACGGTCCACCGGCCACGGCCTCCACTAGTTCCTCAACCAGTGGAGTTG
CCATGGGCAGTTGTAACAACGTCCAGGCACGTGGCCTTAAAGTGCCGCTA
GAAAGTCAAGTAATAGCAAGGGTGAGCTGGTGGACGACGAGGAAGACTCG
GCCACTGAGAACGCCACCACCGCTCCTTTGGGTTTAATTGTGCCAGCGAC
CTCATACTCGAGCAGCGAGGGCGAGGAGGACTTCTACGATGCCTACGACG
ATCCCTTCACCAGCATTGCAGCTCCCGATTGCTGCGCAACGCGCGGCTTT
GCGAAACACATCGCCTACCCATGAAAAGCGCGATGATTTGCCACGCCGAG
CCAGTGGCTGTGGGCGATCAGTGCCCCCAAACGCTGCCCAGAGATCGATG
AGTTGCCGATGCCGAACCAGATAGACGCAGACCGCATAGTTCCGA
FMO12190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1513-RA | 3827 | CG1513-RA | 288..1417 | 9..1120 | 5120 | 97.8 | Plus |
CG12923-RB | 1838 | CG12923-RB | 1241..1484 | 542..299 | 1190 | 99.2 | Minus |
CG12923-RB | 1838 | CG12923-RB | 1089..1167 | 621..543 | 395 | 100 | Minus |
CG12923-RA | 1234 | CG12923-RA | 1089..1167 | 621..543 | 395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9888888..9889131 | 542..299 | 1190 | 99.2 | Minus |
2R | 25286936 | 2R | 9887166..9887409 | 863..621 | 1125 | 98.4 | Minus |
2R | 25286936 | 2R | 9891235..9891402 | 176..9 | 840 | 100 | Minus |
2R | 25286936 | 2R | 9889606..9889736 | 306..176 | 655 | 100 | Minus |
2R | 25286936 | 2R | 9886950..9887055 | 968..863 | 530 | 100 | Minus |
2R | 25286936 | 2R | 9888736..9888814 | 621..543 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:59:31 has no hits.
FMO12190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:34 Download gff for
FMO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1513-RA | 271..1397 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:26 Download gff for
FMO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1513-RA | 282..1408 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:01 Download gff for
FMO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1513-RA | 282..1408 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:01 Download gff for
FMO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9886931..9887054 | 864..984 | 97 | <- | Minus |
2R | 9887166..9887409 | 621..863 | 98 | <- | Minus |
2R | 9888737..9888814 | 543..620 | 100 | <- | Minus |
2R | 9888888..9889124 | 306..542 | 99 | <- | Minus |
2R | 9889607..9889735 | 177..305 | 100 | <- | Minus |
2R | 9891235..9891407 | 1..176 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:26 Download gff for
FMO12190.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5774436..5774559 | 864..984 | 97 | <- | Minus |
arm_2R | 5774671..5774914 | 621..863 | 98 | <- | Minus |
arm_2R | 5776242..5776319 | 543..620 | 100 | <- | Minus |
arm_2R | 5776393..5776629 | 306..542 | 99 | <- | Minus |
arm_2R | 5777112..5777240 | 177..305 | 100 | <- | Minus |
arm_2R | 5778740..5778912 | 1..176 | 97 | | Minus |