Clone FMO12190 Report

Search the DGRC for FMO12190

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:121
Well:90
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1513-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12190.5prime Sequence

1145 bp (1006 high quality bases) assembled on 2012-07-23

> FMO12190.5prime
CAGTCGACATGGCCAGCACCACTGGAAGTGCCCCCAGCCTGGGACCCCCC
CAGAGCGGGAGTGGTGGCTCTGGCACATTGGAGGGCACGCTAAGCAAGTG
GACGAATGTGATGAAGGGCTGGCAGTACCGCTTCTTCGTTCTGGACGAGA
ATGCTGGACTGCTGTCCTATTACACGTCGAAGGATAAGATGATAAAGGGC
GTGAGGCGCGGTTGTGTTCGTTTAAAGGATGCGCTAATCGGAATCGACGA
CCAGGAGGACAACACATTCACAATCACTGTGGACCATAAGACCTTCCACT
TTCAGGCGCGACACAACGAGGAGCGGGAGCAGTGGGTGCGCCGCCTGGAG
GACACCATTCGACGCCACGCGAACCGGTCGCGTCTGTGGGACAGCCAAAG
CGCTTTCTACATCGCCGGTGGCTACACGAAGGAAGGGGGCGGGATCGGAA
CAGGCGGCAGAAGACCCAACCACCTGGAGTTGGTGGCGCGCCGTGTTTCC
GAGGCAGATGCCTACCTCCAGCTGATGATTGAGCAAACGAACTTACTGGA
CAAACGCATCGCGGAGCTGACCGATCCGGCGGAGCAGTCTAAGTGCAAGG
CACTCCAGGACAACGCAAATGCCATGCTGGATCACATTAAGCACTCGATT
GTCAGCCTGCAGATTGCCAAAAACATGGCCCACCCAATAAATGGAATCTA
CAACGGTCCACCGGCCACGGCCTCCACTAGTTCCTCAACCAGTGGAGTTG
CCATGGGCAGTTGTAACAACGTCCAGGCACGTGGCCTTAAAGTGCCGCTA
GAAAGTCAAGTAATAGCAAGGGTGAGCTGGTGGACGACGAGGAAGACTCG
GCCACTGAGAACGCCACCACCGCTCCTTTGGGTTTAATTGTGCCAGCGAC
CTCATACTCGAGCAGCGAGGGCGAGGAGGACTTCTACGATGCCTACGACG
ATCCCTTCACCAGCATTGCAGCTCCCGATTGCTGCGCAACGCGCGGCTTT
GCGAAACACATCGCCTACCCATGAAAAGCGCGATGATTTGCCACGCCGAG
CCAGTGGCTGTGGGCGATCAGTGCCCCCAAACGCTGCCCAGAGATCGATG
AGTTGCCGATGCCGAACCAGATAGACGCAGACCGCATAGTTCCGA

FMO12190.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1513-RA 3827 CG1513-RA 288..1417 9..1120 5120 97.8 Plus
CG12923-RB 1838 CG12923-RB 1241..1484 542..299 1190 99.2 Minus
CG12923-RB 1838 CG12923-RB 1089..1167 621..543 395 100 Minus
CG12923-RA 1234 CG12923-RA 1089..1167 621..543 395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9888888..9889131 542..299 1190 99.2 Minus
2R 25286936 2R 9887166..9887409 863..621 1125 98.4 Minus
2R 25286936 2R 9891235..9891402 176..9 840 100 Minus
2R 25286936 2R 9889606..9889736 306..176 655 100 Minus
2R 25286936 2R 9886950..9887055 968..863 530 100 Minus
2R 25286936 2R 9888736..9888814 621..543 395 100 Minus
Blast to na_te.dros performed on 2014-11-28 17:59:31 has no hits.

FMO12190.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:34 Download gff for FMO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1513-RA 271..1397 1..1112 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:26 Download gff for FMO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1513-RA 282..1408 1..1112 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:01 Download gff for FMO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1513-RA 282..1408 1..1112 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:01 Download gff for FMO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9886931..9887054 864..984 97 <- Minus
2R 9887166..9887409 621..863 98 <- Minus
2R 9888737..9888814 543..620 100 <- Minus
2R 9888888..9889124 306..542 99 <- Minus
2R 9889607..9889735 177..305 100 <- Minus
2R 9891235..9891407 1..176 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:26 Download gff for FMO12190.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5774436..5774559 864..984 97 <- Minus
arm_2R 5774671..5774914 621..863 98 <- Minus
arm_2R 5776242..5776319 543..620 100 <- Minus
arm_2R 5776393..5776629 306..542 99 <- Minus
arm_2R 5777112..5777240 177..305 100 <- Minus
arm_2R 5778740..5778912 1..176 97   Minus