FMO12192.5prime Sequence
1146 bp (1032 high quality bases) assembled on 2012-07-23
> FMO12192.5prime
CAGTCGACATGACACCCGGGCCAAAAACAGAAGAGCCCGGTGCCGGTAAA
TTGGCAGCCGAAATAGCCAACTATGTCACCTCATGGATGGGCAGCGATGG
AGCAGAGAATTTGCAAAAGTTTTCTCAGCTGCACTGGGACAACGAGTCGC
AGTTGAGGACTCAGGAACAGGAGTTTGAAAAGTACTACTTCATAGCCATG
AAACACTTGGCCAAAGGACGCGACTTGCATGCTGCTGCCCTTAAAGTTTC
TGTCCTAAGTGAAAGCGCCAATAATCTAAAGTCCGCCCTGGATCAATTCG
CCCAGAAACTGGAGCTGGCCCACGAACGCTATGATGCTGCCGGGCGTCTG
CTGCACTTGCTCACCCAGCATCAGCGGGAAAACGCCGCCAGGGAGGAACT
GCAGCGTTTGGCTGAGCAACTGGGCGCCACCTCGCTGCTGGAGAAGCACT
GGCCGGTGATGCGGAAGACCCATACGTTGCCAGTGGCCAGTAGCACACCG
GCTGCAGCTGCTGGAAAACGGGTTAGCTATCGCTGCAGCTCGGCCAGTAG
GAGTTCCTTTGAGGGAGGTCCATCGAGCAGCAATTGCAGTTGCTGGCGGG
AAAGTCGCAACCTGGAGGACATGGATCAAATGGAAGAGGAGGAAGAGGAG
CAGGATCACGATTGCGACGGTGGTGATGGAGAGGAACAACAGTCCAAGAT
CGCCGATTCTGGTTTGGGCGTTTGCGACAATTGCGAACGTAATCCCAAGC
TGGCCAGGATTTGCTCCTGCCAAAGCCTTAACGAAAAGAGTCACGATGAG
CTGCTCGAGGACGAGTGCTTCGATCGACCCTCTAAGAGATACATGGACAT
CATGCACTCGCCCATGGAGGCGAATGCCCATCTGCAGTGCCATGGCTCCA
GTCTAGAGCTGCCCAAGCTGGAGGAGCTCAGCTGCCTGATCCCAAGATAC
AAAAAACGCTTCTATTGATCATGCGTGAGATGATTGGTACCGAACCGCGA
CTATGTCCGCTCCCTGTACTACGTGATCGAGAACTTTAAAAAATGACTGC
TCGCGAGGATATCCCTCAGCCACTGGAGGGCCAGAGAATGTGATCTCGGT
AATATTCGAGAAAGATCTCGAATCCAAACTCGCACTTCTGGGCACC
FMO12192.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33275-RC | 3253 | CG33275-RC | 98..1238 | 8..1143 | 5325 | 98.4 | Plus |
| CG33275-RD | 6257 | CG33275-RD | 3169..4242 | 75..1143 | 4990 | 98.3 | Plus |
| CG33275-RB | 5584 | CG33275-RB | 2496..3569 | 75..1143 | 4990 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7635873..7636463 | 200..790 | 2955 | 100 | Plus |
| 3L | 28110227 | 3L | 7636524..7636690 | 789..954 | 785 | 99.4 | Plus |
| 3L | 28110227 | 3L | 7635681..7635806 | 75..200 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 7636748..7636881 | 955..1088 | 455 | 92.6 | Plus |
| 3L | 28110227 | 3L | 7633546..7633614 | 8..76 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:59:38 has no hits.
FMO12192.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:36 Download gff for
FMO12192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 64..1213 | 1..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:29 Download gff for
FMO12192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 93..1242 | 1..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:03 Download gff for
FMO12192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33275-RC | 93..1242 | 1..1146 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:03 Download gff for
FMO12192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7636526..7636690 | 791..954 | 99 | -> | Plus |
| 3L | 7633541..7633612 | 1..74 | 95 | -> | Plus |
| 3L | 7635681..7635806 | 75..200 | 100 | -> | Plus |
| 3L | 7635874..7636463 | 201..790 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:29 Download gff for
FMO12192.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7629626..7629790 | 791..954 | 99 | -> | Plus |
| arm_3L | 7626641..7626712 | 1..74 | 95 | -> | Plus |
| arm_3L | 7628781..7628906 | 75..200 | 100 | -> | Plus |
| arm_3L | 7628974..7629563 | 201..790 | 100 | -> | Plus |
