FMO12193.5prime Sequence
1108 bp (1027 high quality bases) assembled on 2012-07-23
> FMO12193.5prime
CAGTCGACATGGGCCTGCTATATGCGCTGCGCGTGAGGATCATGAACTTC
ATGATTTTCTTCCTCCTCATCATCCTAATGCCCGGTCTGCCGCCGCGCAC
CACCTTCCCCTTCAAGGACTATATTGTGACCCCGCCCAAAGACCTGAAGG
GTGCGCTGGAATCGAACTTTCACCTGGAGGGAGCGGAGCGACTGCTGGAG
GGGCGGGTCTACGGCCCGGAGTGCCTGATAGCCCGCAACAACGAGATCTA
CACCGGCATCCACGGCGGTGAGGTCATCAAGCTAACGTCCAACCATGTCA
CGCATGTCACCAAGATCGGCCAGCCCTGCGAGGACATCTACGAGGAGTCC
CGGTGCGGCCGTCCGCTGGGACTGGCCTTTGATACGCAGGGCAACAACCT
CATCATCGCCGACGCCTACTACGGCCTGTGGCAGGTGGACCTGGGCACCA
ATAAGAAGACTCTGCTGGTCTCGCCCGCCCAGGAGCTTGCCGGCAAGTCC
ATCAACCGCCCTGCCAAGATTTTCAACGGCGTGACCGTGAGCAAAGAGGG
CGACGTCTACTGGACGGACTCCTCGTCGGACTTCACCATCGAAGACCTCG
TCTTTGCCAGCTTTGCTAACCCCTCCGGCCGTCTCTTCAAATACAATCGC
TCGAAGAATGTTAGCGAGGTGCTGCTGGACGAACTGGCTTTCGCCAATGG
ATTGGCCCTCAGTCCCAACGAGGACTTCATCGTGGTAGCCGAAACCGGAG
CGATGCGTCTGACAAAGTATCACCTGAAGGGAGCGAAAGCCGGTCAGAGC
GAGGTGTTCGTCGACGGACTGCCCGGTTTGCCCGATAACCTGACACCCGA
CGCCGAGGGCATCTGGGTGCCATTGGTCCAGAGCGCGGATAGCGAGCATC
CCAACGGCTTCACCCTGTTCACTCGCTTCCCAGCGTGCGCCTGTTCCTGC
CCGCATGCTGGCTTTGTTCGAGCTGCCCTTCCGCTACTTGAACAGCGTAT
TTCCGAACAAGGTCCTCGCAGCGATTCGTTCACTTCCGTGGACCATGGAA
AAGCATTCACTGGTGCTGGCGCCCAGCGAACGACTGTTCTGGCTGTTGAA
CTGTAACG
FMO12193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hmu-RA | 2360 | CG3373-RA | 161..1240 | 8..1087 | 5115 | 98.7 | Plus |
| Ssl2-RB | 1519 | CG11833-RB | 757..963 | 665..871 | 180 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27290016..27290422 | 631..1036 | 1845 | 98.5 | Plus |
| 3R | 32079331 | 3R | 27289379..27289680 | 330..631 | 1510 | 100 | Plus |
| 3R | 32079331 | 3R | 27289115..27289320 | 125..330 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 27288929..27289045 | 8..124 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 17:59:42 has no hits.
FMO12193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:36 Download gff for
FMO12193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmu-RA | 151..1245 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:30 Download gff for
FMO12193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmu-RA | 153..1247 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:46:04 Download gff for
FMO12193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hmu-RA | 153..1247 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:46:04 Download gff for
FMO12193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27288921..27289045 | 1..124 | 96 | -> | Plus |
| 3R | 27289115..27289320 | 125..330 | 100 | -> | Plus |
| 3R | 27289380..27289680 | 331..631 | 100 | -> | Plus |
| 3R | 27290017..27290479 | 632..1096 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:30 Download gff for
FMO12193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23114643..23114767 | 1..124 | 96 | -> | Plus |
| arm_3R | 23114837..23115042 | 125..330 | 100 | -> | Plus |
| arm_3R | 23115102..23115402 | 331..631 | 100 | -> | Plus |
| arm_3R | 23115739..23116201 | 632..1096 | 96 | | Plus |
