FMO12194.5prime Sequence
834 bp (310 high quality bases) assembled on 2012-07-23
> FMO12194.5prime
CAATCGACATGATCATGGAAGGGCTTGAAACCCTGGTGGCGCCAACGCAT
CACGCATTCCTGCTCACCGAGACGGCCGCGGCCGCTCACTTCAATGTGCT
GAGCTTCGACACCTGTCTGTTCAAGACGAGCACGGCGGCCCAGAGCAGCG
GCAGTCCGTCGACGGCCACCTACCTGAGTCCCGCCCAATTCGGAGGCAGT
CATCACGGCGGCGCCAGCACCAACAACAACTCCCTGAACTCCTCCTCGAC
CGCATCCTCGTCGTCCACGTCGTCCTCGCTGCTCCACTACACCACAGCTT
CGGCAGCTGCCGCTGCTGCATCCGCCGCTGCTGCATCCGCCAACAATTCA
GTGCTTCGTGCCCGCAATCTCACGGCCACGCCCACCCAGGGCGGTAGTAC
GGGACACGTGGCCGTACAGCCCAACGCCACCGCCAGCACCGGAGGCATTT
CGGCCTCCCATCTCAACCTGCTGAACACCAGTGGCCAACATAGTCCCACC
TCATCGGCCGTCGAGCAGGTGGAGGCCCACAAGCAGCTGATCAAGGCGCT
GCCGGGCGACCTCAACACACCGGTGACCACGTCCAGCGATATTCCCTCGT
TCTTCGGACCCACCACCGTCGTGGAGCCACCGCCCATTACTGGTTCCATC
GAATCCGAGGATCTGTCTTTGGAACCCCAGGTGATATCTGTGGCCAGTCC
CGTGTTGTCTCATTGCATTCCGTTGAAGGAGGAGCGCAGCACTCCGCCAG
CATTGGCTATTGTCAAGGAAAAATCAAGCACGCGATGAACGCAGCAGCTG
CCGCAGCACCGCCGCAGCACAGCAGCAACACCAA
FMO12194.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sr-RC | 3976 | CG7847-RC | 554..1382 | 8..834 | 3840 | 97.7 | Plus |
| sr-RE | 6377 | CG7847-RE | 554..1324 | 8..778 | 3600 | 97.8 | Plus |
| sr-RD | 5757 | CG7847-RD | 1768..2538 | 8..778 | 3600 | 97.8 | Plus |
| sr-RE | 6377 | CG7847-RE | 1894..1949 | 780..834 | 255 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18127021..18127657 | 8..644 | 2990 | 98 | Plus |
| 3R | 32079331 | 3R | 18130394..18130530 | 642..778 | 625 | 97.1 | Plus |
| 3R | 32079331 | 3R | 18131100..18131155 | 780..834 | 230 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-28 17:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 595..797 | 238..440 | 130 | 56 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..684 | 297..340 | 112 | 72.7 | Plus |
FMO12194.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:29 Download gff for
FMO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 542..1375 | 1..832 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:13 Download gff for
FMO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 542..1375 | 1..832 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:47 Download gff for
FMO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sr-RC | 547..1380 | 1..832 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:47 Download gff for
FMO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18127014..18127655 | 1..642 | 97 | -> | Plus |
| 3R | 18130395..18130529 | 643..777 | 97 | -> | Plus |
| 3R | 18131097..18131153 | 778..832 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:13 Download gff for
FMO12194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13956117..13956251 | 643..777 | 97 | -> | Plus |
| arm_3R | 13956819..13956875 | 778..832 | 96 | | Plus |
| arm_3R | 13952736..13953377 | 1..642 | 97 | -> | Plus |
