FMO12195.5prime Sequence
1129 bp (1015 high quality bases) assembled on 2012-07-23
> FMO12195.5prime
CAGTCGACATGTTTTGGCATTTACTATGCGTTCCAAACGACGAAAATGCA
TCCGCGCCCGACGATGGAAATCAATCATGCCAGCCTTCTTCCAAACAAGA
TCAGTATCTAAGTCCTAACCGCAATTGCCAGAAAAACCTGTTGAGGCTTT
ACCCACCACCCCCATCTAAACCACCACCGCTCGTTGGTGCCATCCTGCAA
ACCCGTCTTCTGCATCAGATAAGCCCGTCCGCAATTGCAGATGCGGATGC
AGACTTGAATGCAGTAGGGGAGCTTCTATACCCAAATGTCCTGCAGCGGT
CAGCAACTTTGCCAGCGAAACACAACCGCTTAGGGGTTCGAAGCCGCGTG
ACCTTTAAGGTCCCTTCGTCTAACCTCCCTGCTCAGGATTCATATTCTCA
TCAACCCCGAAATCAGGTTGCAGTCGCTGCAAAGGACGGAATATTGGTAG
ACGTCAAGGCTAAGGAGTCCGTCAAGATGACTTCTGAGGATTTGCTGCAG
CCAGGTCATGTTGTGAAGGAGCGTTGGAAGGTTGTCCGTAAAATTGGTGG
AGGCGGCTTTGGAGAGATATACGAGGGTCAAGATCTTATTACCCGTGAAC
AAGTCGCACTTAAAGTAGAGTCCGCCCGGCAGCCTAAGCAGGTGCTCAAA
ATGGAAGTGGCAGTTCTTAAGAAATTGCAGGGAAAGGAGCACGTATGTCG
ATTCATCGGATGTGGGCGGAATGATCGATTTAACTATGTGGTGATGCAGC
TCCAAGGAAAGAATTTAGCTGACTCCGACGCGCTCAGCCGCGAGGGGCAT
TTTCGCTTAGTACAACACTTAGTTAGGGTTACAAATTTTAAAGGCCATTG
AATCCATCCATTCAGTGGGATTTCTTCATCGTGATATTAAACCGAGCAAT
TTTTCTGTGGTCGTTTGCCTTATAATTGTCGACGCGTCTATATGCTTGAC
TTCGGATTGCGCGTCAGTACACCACTGGCACAGGGAAGTGCGGAGTCCAG
AGCTGCTGCAGTTTCGCCGCACGGTTCGTTATGCTTCTATATGCCCACGA
AATAAAAAATGGAACGCCACGAGGATCCGCGATCAATCTGAATGCTGGGA
ATTGCTATGGGCCACTGCCATGCAAACTT
FMO12195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 17:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Asator-RG | 3750 | CG11533-RG | 135..1215 | 9..1077 | 5035 | 98.3 | Plus |
| Asator-RE | 4104 | CG11533-RE | 135..1215 | 9..1077 | 5035 | 98.3 | Plus |
| Asator-RD | 5187 | CG11533-RD | 135..1215 | 9..1077 | 5035 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 17:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 481207..481704 | 532..35 | 2490 | 100 | Minus |
| 4 | 1348131 | 4 | 480776..481143 | 894..529 | 1740 | 99.5 | Minus |
| 4 | 1348131 | 4 | 480540..480692 | 1040..894 | 470 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 17:59:12 has no hits.
FMO12195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-23 10:32:30 Download gff for
FMO12195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asator-RE | 101..1157 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:15 Download gff for
FMO12195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asator-RD | 135..1191 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:49 Download gff for
FMO12195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Asator-RD | 135..1191 | 9..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:49 Download gff for
FMO12195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 480523..480691 | 895..1054 | 92 | <- | Minus |
| 4 | 480776..481141 | 531..894 | 99 | <- | Minus |
| 4 | 481209..481704 | 35..530 | 100 | <- | Minus |
| 4 | 481811..481836 | 9..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:15 Download gff for
FMO12195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 501149..501317 | 895..1054 | 92 | <- | Minus |
| arm_4 | 501402..501767 | 531..894 | 99 | <- | Minus |
| arm_4 | 501835..502330 | 35..530 | 100 | <- | Minus |
| arm_4 | 502437..502462 | 9..34 | 100 | | Minus |
