FMO12204.5prime Sequence
728 bp (612 high quality bases) assembled on 2012-08-29
> FMO12204.5prime
AGTCGACATGGAGACCCCGACGGGTAGTGGGCGTCCCAGTCGCATGGCCA
CTCCGCGCCTTTCGGAGCGCAAGCGGCAACTGTTTGGCAGTCCCAGATCC
AGGCTGCGCCAAATCAACGACGACGAGGATGATGCGGACGTAGACAGTCT
GGGTGTCTTGCCATTAAAGACCCATGTGGCGGCCAACAGGAAGGGCAGGA
GTCTCTTCGCCGCAGTCCCCGGCAAGTCAAGCAGCAGTGCGAACAGCAGC
CCGGAAACCAACAAGGAGAACAAAAAAACCCGTGGCGGAGTCATGACTGC
CACGGCGGAGCAGCTGCCCCTATTGTTTACAGCCACCATGCGGCTAAATA
GCAACAGCAGCAGCAATAGTCGCAACAGCAGCCCCCGTCTTACGAGGGTC
CAAAGAAAGCGAGCGGATTCTTCAATGTCGTCGCCCACCTCTTCCTCTGA
AGGAACTCCTTCTTCCAGAGCCAGAAATAGCATCTGACGCAGTCCACGAA
CCTTCAGTGCGCATTAGGATCCAGATGCGTTCTCCTCGCCAGAATCTTTT
CAGACTAGGCTAAGCAAGGTGGCAGCTATGCTTATGAATGGTCAGGATTC
AAGATCAATGTTTACAAAAAATCAAAGAATAAACACAACCACAGCCTAAA
GACCACTGCGATGTGTGCATTCAACTAAACCGAAGAAAAACGAGCCCAGC
TGAAGAGTCCCCAGTCGGACGACGAGAT
FMO12204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eco-RB | 3485 | CG8598-RB | 97..812 | 7..727 | 3255 | 97.2 | Plus |
eco-RA | 3654 | CG8598-RA | 266..981 | 7..727 | 3255 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7338177..7338892 | 727..7 | 3150 | 97.1 | Minus |
Blast to na_te.dros performed 2014-11-28 18:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1107..1142 | 347..382 | 135 | 86.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1529..1594 | 329..392 | 126 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2373 | 347..382 | 126 | 83.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1094..1130 | 346..382 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6761 | 350..382 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6782 | 350..382 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6803 | 350..382 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6836 | 350..382 | 120 | 84.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1077..1108 | 350..381 | 115 | 84.4 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6761..6851 | 561..652 | 114 | 62.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1121 | 350..382 | 111 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2382 | 350..382 | 111 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6815 | 350..382 | 111 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6824 | 350..382 | 111 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2815..2850 | 347..382 | 108 | 77.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6899 | 230..382 | 107 | 57.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 886..1005 | 259..382 | 107 | 55.6 | Plus |
FMO12204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:55:59 Download gff for
FMO12204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RB | 91..812 | 1..728 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:37 Download gff for
FMO12204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RA | 260..981 | 1..728 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:53 Download gff for
FMO12204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RA | 260..981 | 1..728 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:53 Download gff for
FMO12204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7338176..7338897 | 1..728 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:37 Download gff for
FMO12204.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7331276..7331997 | 1..728 | 96 | | Minus |