Clone FMO12204 Report

Search the DGRC for FMO12204

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:122
Well:4
Vector:pMK33-CFH-BD
Associated Gene/Transcripteco-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12204.5prime Sequence

728 bp (612 high quality bases) assembled on 2012-08-29

> FMO12204.5prime
AGTCGACATGGAGACCCCGACGGGTAGTGGGCGTCCCAGTCGCATGGCCA
CTCCGCGCCTTTCGGAGCGCAAGCGGCAACTGTTTGGCAGTCCCAGATCC
AGGCTGCGCCAAATCAACGACGACGAGGATGATGCGGACGTAGACAGTCT
GGGTGTCTTGCCATTAAAGACCCATGTGGCGGCCAACAGGAAGGGCAGGA
GTCTCTTCGCCGCAGTCCCCGGCAAGTCAAGCAGCAGTGCGAACAGCAGC
CCGGAAACCAACAAGGAGAACAAAAAAACCCGTGGCGGAGTCATGACTGC
CACGGCGGAGCAGCTGCCCCTATTGTTTACAGCCACCATGCGGCTAAATA
GCAACAGCAGCAGCAATAGTCGCAACAGCAGCCCCCGTCTTACGAGGGTC
CAAAGAAAGCGAGCGGATTCTTCAATGTCGTCGCCCACCTCTTCCTCTGA
AGGAACTCCTTCTTCCAGAGCCAGAAATAGCATCTGACGCAGTCCACGAA
CCTTCAGTGCGCATTAGGATCCAGATGCGTTCTCCTCGCCAGAATCTTTT
CAGACTAGGCTAAGCAAGGTGGCAGCTATGCTTATGAATGGTCAGGATTC
AAGATCAATGTTTACAAAAAATCAAAGAATAAACACAACCACAGCCTAAA
GACCACTGCGATGTGTGCATTCAACTAAACCGAAGAAAAACGAGCCCAGC
TGAAGAGTCCCCAGTCGGACGACGAGAT

FMO12204.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
eco-RB 3485 CG8598-RB 97..812 7..727 3255 97.2 Plus
eco-RA 3654 CG8598-RA 266..981 7..727 3255 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7338177..7338892 727..7 3150 97.1 Minus
Blast to na_te.dros performed 2014-11-28 18:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1107..1142 347..382 135 86.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1529..1594 329..392 126 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2373 347..382 126 83.3 Plus
roo 9092 roo DM_ROO 9092bp 1094..1130 346..382 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6761 350..382 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6782 350..382 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6771..6803 350..382 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6804..6836 350..382 120 84.8 Plus
roo 9092 roo DM_ROO 9092bp 1077..1108 350..381 115 84.4 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6761..6851 561..652 114 62.4 Plus
roo 9092 roo DM_ROO 9092bp 1089..1121 350..382 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2382 350..382 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6815 350..382 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6792..6824 350..382 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2815..2850 347..382 108 77.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 230..382 107 57.9 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 886..1005 259..382 107 55.6 Plus

FMO12204.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:55:59 Download gff for FMO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
eco-RB 91..812 1..728 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:37 Download gff for FMO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
eco-RA 260..981 1..728 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:53 Download gff for FMO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
eco-RA 260..981 1..728 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:53 Download gff for FMO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7338176..7338897 1..728 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:37 Download gff for FMO12204.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7331276..7331997 1..728 96   Minus