FMO12206.5prime Sequence
1120 bp (889 high quality bases) assembled on 2012-08-29
> FMO12206.5prime
GTCGACATGAGCGATAACAGTCCATCGGTGCCCTTGGCGGAGTTCACCAT
CCCACCCGATCCCACGGAGACCGAACCTTTTGTGCCACTGGTGGAGGTTA
AAAAAATGAACGAATCCCCAGTGGTAACGCCGACCACGCCCACCGGCAAT
GGTACACCGCCCACGCAGACGACAAATGGAAACTCAATTGTGGCCACAAA
ATCCGTAAGCGATGATAACAGCATTTTCTCCGTGTTCTACACGCTGGGCA
AGAAGGTGGCCATTGTGGGATCCATTTATCTGGTGGGTTACATGGGCTGG
TCGGTGGCCTGGTTGATAGCGCCGGTCATCCTCTCGGTGGCACGCGACCA
GTTGGCCAAGACGTCGGAGAAGAAGCGCGACATTGCCAAGGCCTCGGCTT
TGGCGTCCGAGAAGGACGTAATCCTGGCCAGAATCGACGAGCTGCCCGCG
TGGGTCTACTTTCCCGATGTGGAGCGCTGCGAGTGGTTGAATAAGATCTT
GAAACAAGTGTGGCCCAATGCCAATCACTTTGCACGCACCTTGGTAAAGG
AAACCATCGAACCCAATGTGGCTTTAGCTCTGGCCAACTACAAGATGCAT
GGATTTCAGTTCGATCGCATTATTCTGGGCACCATTCCACCGCGGATCGG
CGGGTGTGAAGATCTACGATAAGAACGTGGATCGCAACGAGATCATTATG
GATCTTGATCTGTTTTATGCCAGCGATTGCGACATCAATTTCTATTTGGG
TGGTATGAAGGGTGGCATCAAGGATTTTCAGATCCATGGCTGGGTGCGAG
TGGTGATGAAGCCCGCTGATCCGATCGATGCCACTGGTGGGCGGTCTGCA
GATCTTCTTCCTGAACAATCCGAATATCGATTTCATTTTGGTGGGTGTGA
TTGATTTTATGGAAATGCCGGGTCTGAGTGACTTGCTGCGTAGATCATCA
TGAAGCAGATTGCCATGTGATGTGTTGCCAAACAACTGCCATTTCACCTC
ACGAAGAAGGTTTCGGCCGTGGGCCCTCAGAATGCCGGAACCAAAGGCCA
TCATGCCCATTCCACGTGGTTCAAGGCCTAGGACGAAGAAAAAGGGAATC
AATGGGTGTCTGCACAAGGT
FMO12206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Esyt2-RD | 2963 | CG6643-RD | 199..1274 | 7..1083 | 4805 | 97 | Plus |
| Esyt2-RC | 2987 | CG6643-RC | 202..1277 | 7..1083 | 4805 | 97 | Plus |
| Esyt2-RB | 2975 | CG6643-RB | 202..1277 | 7..1083 | 4805 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24551327..24551812 | 10..495 | 2430 | 100 | Plus |
| 3R | 32079331 | 3R | 24551872..24552364 | 494..985 | 2090 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:45 has no hits.
FMO12206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:00 Download gff for
FMO12206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esyt2-RB | 195..1229 | 1..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:39 Download gff for
FMO12206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esyt2-RB | 198..1232 | 1..1036 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:55 Download gff for
FMO12206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Esyt2-RB | 198..1232 | 1..1036 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:55 Download gff for
FMO12206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24551327..24551812 | 10..495 | 100 | -> | Plus |
| 3R | 24551874..24552415 | 496..1036 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:39 Download gff for
FMO12206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20377049..20377534 | 10..495 | 100 | -> | Plus |
| arm_3R | 20377596..20378137 | 496..1036 | 95 | | Plus |
