FMO12208.5prime Sequence
1015 bp (605 high quality bases) assembled on 2012-08-29
> FMO12208.5prime
TCGTTTCTCGTGGCAATTTTCAGACGCCTTTTATTATATGCCCAAATTTC
TTTGCATTCCACCATTTGTGGCCATTAATGGAAGCTGCCTTATTCCAACC
CCCAAAGAACCCACGATATTGCCCTGTTTGAAAAACCTTCAAAACTCCAC
GGTGTTTCCGGAAAATCGTGAAATAGTTACCGTTAGTCCCCCGAATTTAA
TAACGGAAGATGGTGCTACTATCGGAGAAAGCCATTCTAAAGATGAAAAG
CCTAATCTTTCTATCAAAGTACCAGTAAAGGAAGCAGGAGCAGTTGAAGG
CGATAAGACAAACGAAGATTTAAATCCGACCGTCCCTAATGCAAATAAAG
TGCCTACTGATAGTTCGGAAAATACCTTAGATTCGGAACCCAATGACAAT
TTTGTTGGTAAGCCCGAAGACTCCAATCAAAACGAAAGTAATCCGGATAT
TATAACACCGAGTCAACATGCAAATTCGAGCTTAATTTCAACAAACCAAG
GACAAGAAACAAATGAAAGCAACATTCCGGAAAAAGGATCTAATACAGAC
AGTAAAATTAAAACCGACAATTTCGGAAGATTCCCAAGTACATAATATAC
CCCCGAAAAAGGAGCATTTCACGCGATAATACAAATAAAGATTAAATCCG
ACGGTTCCTGATGAGAGTAATGTACCTACTGAAAGTTCAGAAATACCTCA
GATTCGGAATTCGATGACTACAATATTGGTAAGCCCGAAGACTCCGATCA
AACCGAAAGTAATCGGATATTGTAACGCCGAGTCACATGAAAATTCGAGT
CTAATTTCACAATCATGGACAAGCAACAATGAAAGCAACCTTCCAGAAAT
GGATCTAATAAGGCAGTAATTAAACTGCCTACTCCGGAAATTCCAAATAA
TCAAACACTCCGGAGCAGGAGCAGTCACCAAGATTTAAATCGACGTTCCT
GATGCTAATAATTGCTACTGAAAGTCAGAAATGCCTAAATTCGGAATCCA
TGCACAGTTGTAGCC
FMO12208.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30395-RB | 2870 | CG30395-RB | 81..1096 | 5..995 | 4305 | 96.7 | Plus |
| CG30395-RB | 2870 | CG30395-RB | 682..1327 | 282..925 | 1210 | 80.9 | Plus |
| CG30395-RB | 2870 | CG30395-RB | 1020..1309 | 311..601 | 755 | 84.6 | Plus |
| CG30395-RB | 2870 | CG30395-RB | 376..637 | 623..874 | 520 | 82.4 | Plus |
| CG30395-RB | 2870 | CG30395-RB | 1313..1539 | 280..515 | 330 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21765747..21765907 | 121..281 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 21766103..21766235 | 328..460 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 21765569..21765685 | 5..121 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 21766635..21766767 | 650..780 | 535 | 97 | Plus |
| 2R | 25286936 | 2R | 21766291..21766387 | 460..556 | 470 | 99 | Plus |
| 2R | 25286936 | 2R | 21767109..21767241 | 328..460 | 440 | 88.7 | Plus |
| 2R | 25286936 | 2R | 21766653..21766767 | 346..460 | 350 | 87 | Plus |
| 2R | 25286936 | 2R | 21766823..21766919 | 460..556 | 335 | 89.7 | Plus |
| 2R | 25286936 | 2R | 21767109..21767241 | 650..780 | 295 | 85 | Plus |
| 2R | 25286936 | 2R | 21766491..21766570 | 566..643 | 270 | 95 | Plus |
| 2R | 25286936 | 2R | 21765999..21766048 | 279..328 | 250 | 100 | Plus |
| 2R | 25286936 | 2R | 21766121..21766235 | 668..780 | 220 | 83.5 | Plus |
| 2R | 25286936 | 2R | 21766829..21766909 | 785..861 | 210 | 92.6 | Plus |
| 2R | 25286936 | 2R | 21767297..21767381 | 460..544 | 185 | 81.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:47 has no hits.
FMO12208.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:01 Download gff for
FMO12208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30395-RB | 42..1065 | 1..1000 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:40 Download gff for
FMO12208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30395-RB | 78..1101 | 1..1000 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:57 Download gff for
FMO12208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30395-RB | 78..1101 | 1..1000 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:57 Download gff for
FMO12208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21766104..21766235 | 329..460 | 100 | -> | Plus |
| 2R | 21766292..21766396 | 461..566 | 98 | -> | Plus |
| 2R | 21766492..21766578 | 567..650 | 94 | -> | Plus |
| 2R | 21766636..21766767 | 651..780 | 96 | -> | Plus |
| 2R | 21766824..21766928 | 781..877 | 91 | -> | Plus |
| 2R | 21765566..21765685 | 1..121 | 99 | -> | Plus |
| 2R | 21765748..21765906 | 122..280 | 100 | -> | Plus |
| 2R | 21766001..21766048 | 281..328 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:40 Download gff for
FMO12208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17654329..17654433 | 781..877 | 91 | -> | Plus |
| arm_2R | 17653609..17653740 | 329..460 | 100 | -> | Plus |
| arm_2R | 17653797..17653901 | 461..566 | 98 | -> | Plus |
| arm_2R | 17653997..17654083 | 567..650 | 94 | -> | Plus |
| arm_2R | 17654141..17654272 | 651..780 | 96 | -> | Plus |
| arm_2R | 17653071..17653190 | 1..121 | 99 | -> | Plus |
| arm_2R | 17653253..17653411 | 122..280 | 100 | -> | Plus |
| arm_2R | 17653506..17653553 | 281..328 | 100 | -> | Plus |
