FMO12209.5prime Sequence
1110 bp (975 high quality bases) assembled on 2012-08-29
> FMO12209.5prime
AGTCGACATGCTGTTGCGCGGCGTGCAGATCCTGCAGCGAAGACACCAGC
ACTTGGGAAAGGCTTTTAGCCAGTGCTCCTTACGTCAAGACGGCAGGAAC
CCTTGGAGGCGGCATGACGGCGAGGCATTCAAACTACAGCCGTGGAAGCG
ACCAAGCACGTTCCTTCAGTTTCGCTGCAGCGCCAATGGCAGTGATTCCA
AGAAGGAAAAACCTGTGCAGGAGGAGGCCACCGCTGGTCCAGTTGCCAAG
CCAAAGGAAACGAAAAACTTTGAGGTGAAGACCACAAAGGGCATCCTGTC
TATCAGCACCACCATCGAGGACTCCAAAATTAACGAGATTGTGTTTGAAA
AATCCGATCTGCCACCGGTAACGAAGGTGAAAGAGCCGGTTTTGGCCGCA
AGTGCCATTAATCTACGTTCTACGTCTACTGGAGTAGCAACTGGTGCTGT
AGGATTGGGAGAGAGCTCTGGTTCTGTTATGAATCCTCCTGAAACAGTGA
AAAGCGCACCTAAAAATTCTCCGTCTGGTGCTGTGCTAGCTGAAAAGGCG
GGAGAAGGTATTCGAACATCCCCACCTGCAGAGGTAACGCCTCCAGCGCC
TGTGATTCCTCTAAAGCGACCCCGATTCGATTATCGTGCTTCCCTAGAGC
GCAACTTTGTGACCCCCAACCGGGCCATCAGCGATTTCTTGTTGACCGCT
GCTCAACTCGAAAGTCTGCCCAAGATCAAGCGGAGATCGCCGTACGAGCA
GGAGCCACCCATGACTGTCTACTGGCGACGGGATGTGGAGGCTAATGCCG
TCGAAGTGTGGGGGTCCTAGGAAAATCTGTTGCGGGAGCGACTCAGCGGG
AGGTGGAGCGCAGCAATACCAGCAGATTCTATTCACTGTTAACGGCGGTT
GCGTGACTACCGCATGAAATGGGATCCTCGAACAAAGTAATGCTCGACAA
CGACAGGAGCGAGAGTCCGGGCAGTGTGGCACGCATCGCACATGCACATT
GCTTCAGCATGAGTTGCTGTACCGGTCCCCAGCAGTTTGCAAAGTTATCA
TCTTGCCGACTATCCACCAGTCTACCTCGCGTTGCATCTCAAGTCTCTCA
GATCCGATTA
FMO12209.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZnT49B-RA | 2534 | CG8632-RA | 330..1303 | 8..973 | 4550 | 98.5 | Plus |
| ZnT49B-RB | 2549 | CG8632-RB | 330..1318 | 8..973 | 4405 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12653188..12654058 | 8..876 | 4225 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12654127..12654202 | 878..951 | 190 | 89.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:50 has no hits.
FMO12209.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:02 Download gff for
FMO12209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8632-RA | 325..1301 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:43 Download gff for
FMO12209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8632-RA | 327..1303 | 1..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:59 Download gff for
FMO12209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZnT49B-RA | 327..1303 | 1..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:59 Download gff for
FMO12209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12653180..12654058 | 1..875 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:43 Download gff for
FMO12209.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8540685..8541563 | 1..875 | 98 | -> | Plus |
