Clone FMO12210 Report

Search the DGRC for FMO12210

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:122
Well:10
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSrp72-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12210.5prime Sequence

931 bp (839 high quality bases) assembled on 2012-08-29

> FMO12210.5prime
AGTCGACATGTCAAAGGACGCTAATCCCAAGGAGGCGCTCATAAAGGCGG
CTTACGCTGATGTGAATAAGTTCGGCAATAACCAGGAGTTTGACAAGGCT
GTCAAGGCAGTGAATCGCATCCTAGGCGTAGCGCCCGACGATCCCACCGC
CCTGCACTGCAAGGTAGTCTGCCTGGTGCAGCTTTCCAAGTTCGAGGAGG
CCTACAAGTTTATTGAGAAAAATCGACTGTCCTCGCTTTTCTTTGAGAAG
GCCTACTGCGAGTACCAACTTAACAAGCAGCAGCAAGCGCTTAAGACCAT
AGACGATGCGGGTCTGCAGCCCCTGCCTCCGAACCTTAAGGAGCTCCGAA
CCCAGGTCCTGTACCGCTTGGAGCGCTACGATGAGTGCCTAGACTCCTAT
CGCGACATCATTAAGAACACCAGTGACGAGTACGAGGAAGAGCGTCGGAC
CAATCTCAGCGCCGTGGCCGCCAACTTGGCTGTGGATCAGACCAAGGAGG
TGCCCGAGGTGCCGGAAGACACCTACGAGCAGTACTTCAACAGCGCGTGC
ATCCAGGCTAATCGGCAGAAGTATGCTGAAGCCGAGCGCAAGCTGCGCAC
CATCGAGAAGCTCTGTCTTGAGGATGAGTGTGCCTCCCATGAGGAGATCA
TTGAAGAGGTAGACGTCATTCGCGTCCAACTGGCCTATGTCCTCCAACTG
CAGGGCAAGACCAAGGAGGCGTCCAGCATCTACGCGGGACTGCCTGCGTC
ATAAGCCAAAGGACGGAGCCCTGGTGGCCGTGGCAAGCAACAACTTGGTG
GGTGGGTCAATAGGACCAGAACGGTCTTCGAATTCCAAAAATAGATACGC
GCTGCCCTACCCGACTCTGTGGATCTTAGGCTCACCTCGCGCCAAAGCAG
GGTCTAGCCCTCAACAACTGTCTGGCTAGAC

FMO12210.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
Srp72-RA 2149 CG5434-RA 115..1029 8..924 4145 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20588998..20589800 120..924 3410 96.3 Plus
3R 32079331 3R 20588825..20588936 8..119 560 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:02:29 has no hits.

FMO12210.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:55:56 Download gff for FMO12210.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 108..1030 1..931 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:29 Download gff for FMO12210.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 112..1034 1..931 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:49 Download gff for FMO12210.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp72-RA 112..1034 1..931 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:49 Download gff for FMO12210.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20588822..20588936 1..119 96 -> Plus
3R 20588998..20589805 120..931 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:29 Download gff for FMO12210.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16414544..16414658 1..119 96 -> Plus
arm_3R 16414720..16415527 120..931 96   Plus