FMO12211.5prime Sequence
1083 bp (928 high quality bases) assembled on 2012-08-29
> FMO12211.5prime
CGACATGAGCTCTTTTCTCATGGGTTATCCGCATGCACCACATCATGTCC
AGAGTCCCATGTCCATGGGCAATGGCTTGGACCCAAAGTTTCCGCCGTTG
GCCGATGACTATCATCACTACAATGGACACTATTCGATGACCGCATCTAC
GGGTCATATGAGTGGTGCCGTCGGCGGTGGTGCAGGTGTTGGGTCTGTCG
GAGGTGGTGGAGCAGGTGGGATGACTGGTCATCCGCATTCCATGCACCCG
GCGGACATGGTCAGTGACTATATGGCGCATCACCACAATCCGCACAGCCA
CTCCCATTCGCACACCCACTCACTACCGCACCACCATAGCAACAGTGCAA
TATCTGGACACCACCAGGCATCCGCCGGCGGTTACAGTTCCAATTATGCC
AATGCCACTCCGCCCTCACATCCGCACTCGCATCCACACGCTTTATCCGC
ACCAGAGCCTCGGCTATTACGTCCACCACGCCCCCGAATTCATATCCGCA
GGAGCGGTGCACTCCGATCCCACGAACGGATACGGACCGGCGGCAAACGT
TCCAAATACGAGCAATGGCGGTGGTGGCGGAGGAAGTGGCGCAGTGCTCG
GAGGTGGCGCAGTGGGTGGATCGGCAAATGGATATTACGGCGGGTACGGT
GGGGGTTATGGGACGGCGAACGGAAGTGTGGGCAGCACCCACTCCCAAGG
ACACTCGCCGCACTCCCAGATGATGGATCTGCCCTCTTCAGTGCAGCTCC
ACTGAACCACCGACGAACACGGCGCTGGGACTGCAGGAATTAGCCTAAAA
CTAGAAAAACGCATAGAAGAAGCTGTACCTGCTGGACAACAACTGCAAGA
GCTAGGGATGCGATTGCGGTGTGATGATATGGGATCCGAAACGACGATAT
GTCGAGGATGATCGCTCATGCTGATCGATCTCCAGACGAGCTGGCTCACG
ACAACGACGACGACCTCGGGACTCAGACAGCGATGAGATCTGATGGCGGA
AACGACCGTGCGAACCGATCTCTACCCCTGAATGAAAGATCCATGGTGGC
GGGATTGCGACGTCTAACACCCGTATTGAACCC
FMO12211.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dfd-RA | 2739 | CG2189-RA | 489..1558 | 4..1060 | 4790 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6792324..6793111 | 4..793 | 3805 | 99.4 | Plus |
| 3R | 32079331 | 3R | 6793497..6793595 | 793..891 | 480 | 99 | Plus |
| 3R | 32079331 | 3R | 6793696..6793786 | 923..1008 | 230 | 91.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:32 has no hits.
FMO12211.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:55:57 Download gff for
FMO12211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dfd-RA | 486..1543 | 1..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:31 Download gff for
FMO12211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dfd-RA | 486..1543 | 1..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:50 Download gff for
FMO12211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dfd-RA | 486..1543 | 1..1045 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:50 Download gff for
FMO12211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6792321..6793111 | 1..792 | 99 | -> | Plus |
| 3R | 6793497..6793597 | 793..892 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:31 Download gff for
FMO12211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2618043..2618833 | 1..792 | 99 | -> | Plus |
| arm_3R | 2619219..2619319 | 793..892 | 98 | -> | Plus |
