FMO12213.5prime Sequence
647 bp (543 high quality bases) assembled on 2012-08-29
> FMO12213.5prime
GACATGGCTGCCTACACACAATTCGGATACGGAGGCTTTCCGTCGGCCTC
GCAGCTCCTGCCACCGAGTGTCCAGACGACGGAGGACGCTTCCGCGAACG
TGAATGTGAATGTGAACGAGGCGCTGGTGATGACAAACGCCCCGGCGATG
AGCCCCACGGGAGGTCAGGATTGTCAGGGTAGCCAGCCGTCGGGCGGCGC
TGGCGGAGATGCCTCCTCGGGGGCGCTGAGTCCCAATGCGCTTTCGCAGA
ACTCGAATGCGGCGACGGTGGTTGGAGCAGGTGGTGGATCCTCGGCGGGC
GGAGGAGGTCCAGCGGATCTGGCCACCGGTGGCTCCCTGGACGGCAACGG
CGTGGGCACGACGCCCACTGCTGGTGGTGCTGGTGGTGGTGGATCATGCT
GTGAGAACGGGCGGCCCATAATGACCGACCCGGTGTCGGGTCAGACGGTC
TGCTCCTGCCAGTACGATTCCGCCCGCCTCGCCCTCTCCAGCTACTCCCG
TCGGACTGTTTGCCACTACGCGTCAAAACGTGCGCCCTCCTAACAGTAGC
GCTCAGTGTTCAGCATCTGTCGCACCTCGCACGGACTTGAAAAAGAGGAA
ATGTTAGTGTTTTTTTCTTTATATTCCTTCTTGTTTCTTTTGTTTTT
FMO12213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ara-RB | 2918 | CG10571-RB | 432..930 | 4..502 | 2480 | 99.8 | Plus |
| ara-RA | 2942 | CG10571-RA | 432..930 | 4..502 | 2480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12585738..12586189 | 51..502 | 2245 | 99.8 | Plus |
| 3L | 28110227 | 3L | 12581103..12581153 | 4..54 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:02:53 has no hits.
FMO12213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:02 Download gff for
FMO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RA | 427..931 | 1..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:45 Download gff for
FMO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RA | 429..933 | 1..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:00 Download gff for
FMO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ara-RA | 429..933 | 1..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:00 Download gff for
FMO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12581100..12581153 | 1..54 | 98 | -> | Plus |
| 3L | 12585742..12586192 | 55..506 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:45 Download gff for
FMO12213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12574200..12574253 | 1..54 | 98 | -> | Plus |
| arm_3L | 12578842..12579292 | 55..506 | 99 | == | Plus |
