FMO12214.5prime Sequence
1052 bp (865 high quality bases) assembled on 2012-08-29
> FMO12214.5prime
GTCGACATGATGCCCGAAACTGAACGCGACGCACATTTGGAGGCAGCTGA
AATGGCCAGTGGCGCCCTGGCGCATAATTACGGTATTGTTAAGGATCAGC
AACAACAGCAGCAGCAGCAGCAACAACTGCATCACCTGCAGCAGCAACAT
CATCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCCAACTCCGA
TCTGTACAAGATGGCCTGCAATGGCTACAACTATAGCAGTCCGCTGACCA
TACCGCCCACCTCGATGACCACGCACATGGTCAGTCCCATCGGGAACAGC
AAGGAGAAGCTGGTGAATATGTTGCGCGTGCGTGACAACAACAACATGGC
CAGCACGATCTCCGACAGTCCACCCACAACGTTTCTGCAAAAGCAACTGG
AGGCGGTTGTGGCGCCCCGGCCAAGTTCAGTGCATCCCCAGCATCAGTAG
CCGCAGCAGCAGACTGTCCAGCTGCAGCAGCAACGGCGTTCGGTCAGCAC
ACCTGCGATTACAACCACACCTGGTCCGCCCACCAATTGGCATGCCCATG
TCTATGATCGACTGCCGCCACACCCGACGCCCCACTCCATCGCCGATATC
CTGGGCATGTCCCTTGTCAAAAAGGAACGGCCTGGAGGTCGCCTTTGATG
CCCAAGGACTGTGCCAAATCGCCGAAATAGCATACTGAAACCGTATCAGG
AACAGCAGCCCATTCGAAGCTCCTCCATTTCGATGAGCGATGCCAGCGAG
GAGGAGAGTGCCGCTGTTGCTGGGGCAACATCTGCCGCAACAGCAGCAGC
AGCAGTGGTAGCAACCATCACAGCAGCACCTGTTGCAACTCCCGCTCGAT
CAGCCGCTAAATCTGTGGTGTGGTCCAAAAGTCTCGCGACAGCAACAACT
CACCCATGCCGGCCACCAACGTAGTGTATCTTCGGAAAGTCTGCTACAAT
GAAGGAAGTTCTGGTAAGCCGGCGGCCAAGAAAAAAACCTATCGTCAACT
GGTTGCTCCTACCACGGATATTAGTCCAACGGGCACACTGACAGTTTGAT
GC
FMO12214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NK7.1-RD | 2731 | CG8524-RD | 482..1526 | 7..1052 | 4650 | 97 | Plus |
| NK7.1-RC | 3540 | CG8524-RC | 564..1608 | 7..1052 | 4650 | 97 | Plus |
| NK7.1-RB | 2996 | CG8524-RB | 747..1791 | 7..1052 | 4650 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14344263..14345170 | 919..7 | 4210 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 18:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2458..2609 | 92..239 | 254 | 65.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1074..1163 | 736..827 | 166 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6985 | 689..894 | 163 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2415 | 775..857 | 161 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6920 | 776..899 | 160 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6851 | 775..845 | 148 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6658..6899 | 290..521 | 146 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6847 | 775..865 | 142 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2351..2472 | 775..899 | 141 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2833 | 776..831 | 136 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6802 | 778..865 | 136 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6815 | 775..857 | 132 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6911 | 676..857 | 130 | 56.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1164 | 432..525 | 126 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2877 | 764..860 | 125 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2373 | 787..854 | 124 | 64.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1151 | 764..863 | 124 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2403 | 432..521 | 121 | 64.9 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4526..4616 | 775..861 | 120 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6824 | 432..487 | 118 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2537 | 776..918 | 115 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6770 | 438..487 | 115 | 70 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3346 | 776..843 | 115 | 63.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1120..1149 | 775..804 | 114 | 86.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1151 | 760..830 | 114 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6791 | 432..487 | 111 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6760..6812 | 432..487 | 111 | 69.6 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4508..4549 | 787..828 | 111 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1514..1569 | 429..484 | 109 | 66.1 | Plus |
FMO12214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:03 Download gff for
FMO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RB | 556..1606 | 1..1052 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:47 Download gff for
FMO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RA | 414..1464 | 1..1052 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:02 Download gff for
FMO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RB | 741..1791 | 1..1052 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:02 Download gff for
FMO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14344225..14345174 | 1..955 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:47 Download gff for
FMO12214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10169947..10170896 | 1..955 | 97 | | Minus |
