FMO12215.5prime Sequence
990 bp (763 high quality bases) assembled on 2012-08-29
> FMO12215.5prime
TCGACATGGATCGGGATTCGAGCATGCAGGCGAAAAACCTAGATGCTCAA
TGCAACCCAGACCTCAAAATGGCGTCTGCAAATTCAGAAACTTTAGCGTC
GGCAACGCACGAGCTGAAAATTATGGACGTAGAGGGTGGTGCTCTGGTGG
ATCCGGATCACATCGAGGAAGTGGAGACCTCCATGGTCATCGTGGTGGAT
GATGACGATGGGGATGTGGCCATGGTGGTGGAGGAGGACAAGCACCCGAT
GCGGGATGACCCGTGTATTGAGGACATCATGGATGACGAACATGCTCCAT
TGGTGGCCGAGCTACAGTCCGCTCTAAATAACCCAGACGACAAACAGGCC
AGCGAGGATCCCCTCCTGGAAGACCAGGAACGTGAACCCGATGCCATGTC
CACTAAAACTGAACCCTCCAGCGATGCGGAGAGCTCCCATTCGTACCACG
ATCCCATGGGCCTGCTGGAGAGGATTGAAATCCATGATCCGGGAGACAGC
CAGGATGACGACGACGAGGATGACGAAAGCAGCAATGGCGGTGGCGTTGA
CGGAGGCATGCGCCGCAAGATGCCCCGCGCACAGCGCTGGCTCCTCTGGA
TGAAGCGTTGGCCTTGGATCCTACACGAGGACTTGGATGGCACCTTAGCG
TTCTGCCTTCTGTTGCAACTTATCCATTAACGTGAACAACCGCTCTAGAC
ACATCCAACAGCACAACGTGTCGCTCTCCACCAGGAAACGCGAGTGCAAC
TATCTGGCATTCAGGATAGTGAGGAGGAAACTCGAGGAGCAATCAGCGTG
AACGAAATCAAGCACGAATTTCGGCACAAGAGCTATGTTGGCCGCCATGA
TCCATAATGAATCTCCGAGACCGAAGCATTTACTGCTTCAACTGGCTGCG
TTGGCTCCGTTGGCATCCTTGGCTTAGAACGTTCCATGGCCACAGGACCA
TCGGGACTTGTCGCATCTGCGCGTGCGAATGAACGGGAAT
FMO12215.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-7-RA | 5051 | CG8599-RA | 153..1134 | 6..985 | 4350 | 96.9 | Plus |
| Su(var)3-7-RB | 4217 | CG8599-RB | 153..1128 | 6..985 | 4250 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13264516..13265300 | 6..790 | 3635 | 98.1 | Plus |
| 3R | 32079331 | 3R | 13265735..13265931 | 791..985 | 455 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:03:02 has no hits.
FMO12215.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:04 Download gff for
FMO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-7-RA | 157..1149 | 1..990 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:49 Download gff for
FMO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-7-RA | 148..1140 | 1..990 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:04 Download gff for
FMO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-7-RA | 148..1140 | 1..990 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:04 Download gff for
FMO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13264511..13265300 | 1..790 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:49 Download gff for
FMO12215.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9090233..9091022 | 1..790 | 98 | -> | Plus |
