FMO12217.5prime Sequence
922 bp (831 high quality bases) assembled on 2012-08-29
> FMO12217.5prime
GTCGACATGCGACTCTTTGCCAGCAGTGGCCAGGCTGCAACATCGCCAGC
ACTGGCCCACAGTTCCAGCGATGAGGCTGGCGAGGTCATTGAGAATTCCC
ATACCAAGAGAGCAGGATGCTCCGTGCTGCAGAGCAGTGGTGGAAAGTCA
AGGTCGCTGGAGCGTTACTCGGGAGCACCCAAGATACACCAGCAGACGTT
GGAGATGCTGCCGCCCTATGCCACGCCCACGTGCAGCACCCGTCGCCGAC
TCCTCGCCCCCTTTCGATCGCTGAAGCGTCGCAGTCGGAGCAGCAGCAGC
AGCAATGAGTCGCACCACTTTGGCAACCATCTCAACAACCTGGTGGTGGT
CAATGTAGGGGCGGCCGCTGCAAATGGAGGTGTGGCCAAGGCCAAGGCGA
AGGCCAGCTCCCAAAGCGGTGACAGTGGAACCGGTGGCACCGAATTGTTT
TTATGAAATGGAACAGGATGACGACGAGGAGGATGAGGAGGAGGGCGAGG
AGATGGACGAACTGAGCCTGAGTTACTCGCAGTTGAGCAGCAGTGGCTGC
GAGGAAGCCGAAGCTCCACCAGAAGATGTTCCTGATGATCGACAAGCAGC
TGTGGAGGCAACAGTCACTGCCTGCGTGCAACACGTTGCCAATGAGCGGC
GACGCAACATCCTGTTGCTGTACTCGTCCTCGTCGGAGGAGCAGCTCCAC
TGCCCGCCCTGGGCGACATTATGCTGGTGGACGATACCTACTCCAACTAC
GATCCGCAAAACGATGCCGAGCGCATGTTCTCCAGGTTGTCGGAATCTTA
CGCGATGAGAATGAGAAAATGCGTCAGTTCCAGAGGATCCTGGAGGATCT
TTAGCTCTGCGTTGCCCTTGCGAGCAGACAAAACCCTCCTGGCTGCCACC
CTCATCCGGTGGGCGAGCCAAT
FMO12217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dys-RJ | 4723 | CG34157-RJ | 530..1444 | 7..922 | 4225 | 97.9 | Plus |
| Dys-RE | 4821 | CG34157-RE | 931..1845 | 7..922 | 4225 | 97.9 | Plus |
| Dys-RH | 11964 | CG34157-RH | 8577..8685 | 815..922 | 385 | 92.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19585708..19586514 | 7..815 | 3765 | 98.5 | Plus |
| 3R | 32079331 | 3R | 19590122..19590217 | 814..908 | 310 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:03:05 has no hits.
FMO12217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:05 Download gff for
FMO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dys-RE | 629..1550 | 1..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:51 Download gff for
FMO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dys-RE | 924..1845 | 1..922 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:06 Download gff for
FMO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dys-RE | 924..1845 | 1..922 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:06 Download gff for
FMO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19585701..19586514 | 1..815 | 98 | -> | Plus |
| 3R | 19590124..19590231 | 816..922 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:51 Download gff for
FMO12217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15411423..15412236 | 1..815 | 98 | -> | Plus |
| arm_3R | 15415846..15415953 | 816..922 | 92 | | Plus |
