Clone FMO12228 Report

Search the DGRC for FMO12228

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:122
Well:28
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9883-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12228.5prime Sequence

795 bp (793 high quality bases) assembled on 2012-08-29

> FMO12228.5prime
TCGACATGGCCGGCGGATTTCGACCGTACGATCAGGACTCGTGTCCTAAC
CTTACAAATAGCGAGGCTCCGGAATTCAGCATGTCAGTCGTTTGCAAAAC
GGAGCCGCACTACTTTCATCCGCAGACTGCTATCCTGCCCAGCGTCCAGT
ACTCCCACCCATATCACCACTATCTGAGCCAGTTCGCCCCGAACTTCGTG
CCCTACTACTACCGCCTGCTCTCGCGGCCCATAATGAAGCAGGAGGAGAT
GGACATCGAGAACTACATCAACTACGAGGTGGCCGCCCAGCAGACCATGA
TGCGCCAGCGGACCCTGAAGCCCCTGGGTCAGCTGCAGATCCAAATGCCG
CCTCCCATAATAGTCAACCAGCCAGTTAAGCCAGTTCCCGTTAAGGCAGT
GCCAGTCCGCCGAAGCTCTCCGCCCAAGCGACGCGTCATCAATGCCCAGT
TGGTAGCGGTAGCCACCGCTTCCGGGGGCATTAAGAACATCGAACCGCGG
GTGGAGCCACTGCCTCGCCTGGAGGAATCCTTTAAGCAGCAAGTGGCCAA
AATCCAGAAGAGTCAGCACCACTACGAACAACTCTTTGGTCGTCTCACTT
CCATGCTAAAGACCCTGACTCAGCGGTACGACAACGATGCCGAGGATGTG
CCCGCGCCGCCCTTGATGAGACCGCGCCACATGTCCACCAGTTCGTCGGA
AATCGCACATCCCAGATACTGCCTCTGAAAAGGACGAGAAAGACACTCTT
GTGCAGTACCCGCACCGAGTGCAAAAGGAGGACGGCAGTGCGGGT

FMO12228.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
Elba2-RA 1493 CG9883-RA 177..963 6..793 3855 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2577863..2578649 6..793 3830 99.4 Plus
Blast to na_te.dros performed on 2014-11-28 18:03:15 has no hits.

FMO12228.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:07 Download gff for FMO12228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9883-RA 188..980 1..795 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:41:57 Download gff for FMO12228.5prime
Subject Subject Range Query Range Percent Splice Strand
Elba2-RA 172..964 1..795 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:11 Download gff for FMO12228.5prime
Subject Subject Range Query Range Percent Splice Strand
Elba2-RA 172..964 1..795 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:11 Download gff for FMO12228.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2577858..2578650 1..795 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:41:57 Download gff for FMO12228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2577858..2578650 1..795 98   Plus