FMO12238.5prime Sequence
832 bp (760 high quality bases) assembled on 2012-08-29
> FMO12238.5prime
GTCGACATGAACTTCCCACTGGCGAGCGTCAACAAGGATACGTTGCGGGC
TGCCTGCAAGAAATGCGGCTACGCCGGTCACCTGACCTACCAATGCCGCA
ATTTTCTCAAGGTGGACCCCAACAAGGAGATCCTGCTGGATGTGGAGAGC
ACCAGCTCAGACTCGGAGCTGGACTACCTTACGCCGCTCACCGAACTGAG
AGCCCAGGAGCTGAAGAGTGGCGCTGAGGTGCCGCCGCCAACGGAGCCAG
CGGTGCTTCCCGCGGCAGGCAAACGGGACAGGAGCAAGGACAAGAGCCGC
GACAGGCTCAAGGCGAAGAAGCGGGAAAGGGAGCGGGAGAGAGAGAAGGT
GAAGGAGAAAGAGAAGGAGAAGGGTAGCCGGAGCAAGGACAAGAAGCGTA
GCCACTCAAAGAGCAGCCACAAGCTGGCCGAGAAGAGCAAGGACAATTTT
TTCGGTGCGGCACAAGAAGCATGGCTAGAAGAGGAGCCGGAAGCACAAAA
AGACCACAAACACCAACAATAGCAGCAGCAACAGCAGCAGCGAGCTGGCC
AAAACCAAAACAGGCAAGCGACCGAGCAGCGGCAGCACCAACAAGAAGTC
AAAACGACGACGATCATCCTCCACCTCTAGCTCGGATACGTCGTCGTCGA
CGTCGTCCTCCTCTTCCTCCTCGTCTTCAACCAGCAGCTCATCTTCGTCA
TCGAGCGATGATTCGAGTGATGACTCCTCCACATCGAGCGATTCGTCTGA
ATCGGATTCCAGCGACAACGAGGAGTTCCAGCACCAGTGATCTGATGAGT
ACGGACGCAAGAAGAAGCGGCAGGGTCAAGTA
FMO12238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3918-RA | 1808 | CG3918-RA | 226..1050 | 6..832 | 3875 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6524864..6525578 | 110..825 | 3270 | 98 | Plus |
| X | 23542271 | X | 6524689..6524796 | 6..113 | 540 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6831 | 487..596 | 218 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6875 | 474..618 | 210 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6864 | 461..590 | 210 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2752..2894 | 492..626 | 207 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6901 | 488..594 | 196 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2525 | 495..704 | 192 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6921 | 398..593 | 191 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2471 | 463..597 | 188 | 64.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1018..1163 | 473..618 | 188 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2494 | 457..596 | 187 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2251..2434 | 419..604 | 186 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6701..6842 | 484..624 | 184 | 66.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1147 | 458..543 | 180 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2196..2584 | 271..645 | 172 | 54.3 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 667..925 | 336..594 | 168 | 55.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1176 | 492..607 | 162 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6954 | 376..565 | 152 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6896 | 375..541 | 151 | 59.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1179 | 457..560 | 142 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2689 | 505..572 | 141 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1592 | 458..546 | 136 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2438 | 505..635 | 135 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2890 | 496..599 | 133 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2452 | 492..596 | 131 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2892 | 463..611 | 131 | 61.3 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 969..1034 | 499..563 | 129 | 70.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1126 | 464..543 | 127 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1538..1596 | 501..560 | 126 | 70 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 128..200 | 496..567 | 119 | 64.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9158..9230 | 496..567 | 119 | 64.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5629..5678 | 491..541 | 108 | 70.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 7084..7133 | 491..541 | 108 | 70.6 | Plus |
FMO12238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:10 Download gff for
FMO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3918-RA | 211..1040 | 1..831 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:01 Download gff for
FMO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3918-RA | 220..1049 | 1..831 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:18 Download gff for
FMO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3918-RA | 220..1049 | 1..831 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:18 Download gff for
FMO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6524683..6524794 | 1..111 | 97 | -> | Plus |
| X | 6524866..6525583 | 112..831 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:01 Download gff for
FMO12238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6418716..6418827 | 1..111 | 97 | -> | Plus |
| arm_X | 6418899..6419616 | 112..831 | 97 | | Plus |
