FMO12239.5prime Sequence
943 bp (869 high quality bases) assembled on 2012-08-29
> FMO12239.5prime
AGTCGACATGCTGCGGACCTTTGCCATTCTGCTACTGATCGCAGTTTACA
GCCACGCAAGAGCTGCGCCACAGAAAACAACCGTTTCGCCGGAGTATGAA
GCCACCGAGGACGTGGACTCCTCCACCTATATGTCCGTGGAGGAGAGCAC
CATTACGGTAGATGTCGACTCGGACGTGATATTGACCACCAATCCTGAGG
GGGAGGCCTTCACCGAAGCCAGCCCGATAGTTACGACGGAGGAGCCACTT
CCGGATTCGGTGGTGCAACAGCTTGAGATGGAGCGTGCACAGGAGGAGGA
GCTCAAGAATCCCGAAAAGCCGGAAGATGACCTCGATTCGGACTCGGAGG
AGGAGGATCAGACCACATCAACAAGTACTGAGCAACCAAAGTCTGAAGTT
TCCGAGAGCACCACCAAGCGGAGCTACAAATTCGGAGCTACCACACTGCC
ACCGAATTTCATCACAACCACTAGAAGAGTGGAGATCACCACTATTCTGC
CACAGGACGGAGCCACGACTCCTAATGCTGAGACCGAGGAAACCACCGTC
AAGGAGGAGGTCAAAACCATAAGGAACTACTTCGAGCGGAAGCCCGCACA
TATGGAAGAGATTGAACTCGACATGGCCGAGAACCGAATGGAAACGACCA
CAAATGAACCCCTCTGATGAGAACGTAGAGCTTTCCATGATTATGACCAC
CGACGCCGCATTGGTGGAAGAGGATAAAAAGACCGGAATTGAGACTGATC
AGGCAGAGACGGTGGAAACCACAGTGGTGCCTGTTTACCAATACGTTAGC
AATGCAGCTCCTATCGTCACTTGAACCACAACTCGGAATCAACTACGGTG
GTGCCCACAGTAAAGGAAGAGGCAGCCACCATTGAGGTGCCATTGAGGAA
ACTACAGAACTGCCACTAGTTTTTGTCCTCTGCATTTAAACCC
FMO12239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17104-RC | 1593 | CG17104-RC | 88..1024 | 4..943 | 4520 | 99 | Plus |
| CG17104-RB | 2130 | CG17104-RB | 425..1361 | 4..943 | 4520 | 99 | Plus |
| CG17104-RA | 1763 | CG17104-RA | 258..1194 | 4..943 | 4520 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10677904..10678805 | 4..907 | 4265 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:03:30 has no hits.
FMO12239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:10 Download gff for
FMO12239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17104-RA | 250..1189 | 1..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:02 Download gff for
FMO12239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17104-RA | 255..1194 | 1..943 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:21 Download gff for
FMO12239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17104-RA | 255..1194 | 1..943 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:21 Download gff for
FMO12239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10677901..10678805 | 1..907 | 98 | -> | Plus |
| 2L | 10678904..10678938 | 908..943 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:02 Download gff for
FMO12239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10677901..10678805 | 1..907 | 98 | -> | Plus |
| arm_2L | 10678904..10678938 | 908..943 | 97 | | Plus |
