FMO12240.5prime Sequence
878 bp (844 high quality bases) assembled on 2012-08-29
> FMO12240.5prime
GTCGACATGCCCTCCATATGGCTGTTAGTCTCGACGCTGGCTTTGGTTAG
CTGCCAGGACTATCATTACCACCGTCCACAGACTCCTTTCGTTGCGGAAT
CTTACCATCAGCACCAGCAGCCTCAAGCCACCAAGTTTGTGGTGCAGACT
TTGGGTCGCACCTACGGTTTGGAAACCCAAAGGGCACCAGCCATCTATGA
GGATTATCAGACGCATATTGTGCAGCTCTTCCAGCAGCGACAGGTGCCGC
AGTATCATCAGGCTCCCCGCCAACAATTGCACACTTCTAGCTACCAGAAT
CCCCTGCTGGTCAGCGCCAACTACCAGGCCGGCACCGTGTCCTTGGCGCC
TCCAGCTCCCGCTGCTCCTGCCCAGCCACTGACCAGCTATGGGCCACCTC
ACCTGCAGCACCAGTCACAGCCTCTGCAACCTCCACCGCAGACTCCCCAA
TACTTCCCCCAACAGCAGCAGCCACCTGCAAGCTATTTGCCACCTCAGCA
GCCTGCCCAGAAATTGTTCTTCGGCAATCCGTTTCCCTATGCCCCTGTGA
CGACCGGCTCGGGGCAACAGGTGCTGGATGCAGGACATGGATCAGGTGTG
GCGCCCAATGAAGTGTGGGCTCAGCTTTTGCAAGCTGCCGGAGCTGCGCC
ACCACAAACTCTGCGTGGGGTATCCAGGTGGCTCAGTCGCAGAGCTCCTC
TTTGGGATGCCTATGACTACCAGCAGAGCACTCCCGGAGAAAACCGAGAG
TACCAAGGGTTCGTCACCAGCTGCCCGGGGAGGTGGGAGCCTGCCCAGCA
GAAGGGACTTCAATCCAGGCGAGGTGGGATGATAGCCACCACCGGGTTCT
GCAGACAGTGCGAGCCCATAACCCACCT
FMO12240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7080-RA | 1178 | CG7080-RA | 69..920 | 7..866 | 3935 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22329466..22330288 | 36..866 | 3590 | 97.7 | Plus |
Blast to na_te.dros performed 2014-11-28 18:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2461 | 313..512 | 130 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 353..502 | 130 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6809 | 382..475 | 118 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1598 | 400..483 | 110 | 61.9 | Plus |
FMO12240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:11 Download gff for
FMO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 63..931 | 1..878 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:05 Download gff for
FMO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 63..931 | 1..878 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:22 Download gff for
FMO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7080-RA | 64..932 | 1..878 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:22 Download gff for
FMO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22329363..22329397 | 1..36 | 91 | -> | Plus |
| 3R | 22329467..22330300 | 37..878 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:05 Download gff for
FMO12240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18155085..18155119 | 1..36 | 91 | -> | Plus |
| arm_3R | 18155189..18156022 | 37..878 | 97 | | Plus |
