FMO12248.5prime Sequence
1069 bp (945 high quality bases) assembled on 2012-08-29
> FMO12248.5prime
GTCGACATGTTCAAGTTCGTGCTGAACGACGCCGCCAGCTACGTGCGATC
CAATGTGCGGGAGTTCAGTTTGAATGCACTGCGTCTGCTGCCGCAACTGC
CTCAATTGAGTCCATACGATGTTAACCTTGTTCTGAGGGAGAACGAGTTC
GTTTACAACTTTCCCGTGGATGGAGTCATCCGCAGCTATGAAACAAATCA
GCTGGGATCAAACTGGCCCTGCGAGGATTCCCGCACGGAGGCCAGCTTCC
TGCACCGCAACGGCTTCATTTGTGGCATTTTCGACGGGCATGCGGGAGCA
GCATGTGGCCAAGTGGTGTCCAAGCGACTGCTTCGCTATGTTTCGGCGGC
CACGCTGCCGCGCCAGGTGCTCCGGGAGCAGATGAAGCAGGGTGCCGACA
GCCAGTCGTTCCTCAAGTGCCACAATGACAACGTGGACTTTGTTATCATG
ATCAAGCCCATGTACGAGGCTAGTTTCCTCAAGTATGTCAATCAATTGTT
AGAGACACCGCAACGGGATGTATCCAGTGAACTGGTGAACGCCTTCCTCC
AGCTGGATGAAGAGATCTCGCAGGAGGCTCTGACCAGCAACGATGTACGC
ACCATGAACGTGGCCCTTTCTGGAGCCGTTGCCTGTTTGGTTCACATTGA
GGGACTGCAGATGCACGTGGCCAGCACGGGTGATTGTGGCGCAGTGTTGG
GCGTTCTTGATCCCCAGACGCAGCAGTGGCACTCAAAGAAGCTTAACATC
GAACACAATGCTGACATATGTCCGAGGTGCGTCGCATTCTGGCCGAGCAT
CCCAAGGAGGAGCATGAGACGGTGATCCGAAACGGCAAGGCTGCTTAGCC
AGCTGGCGCCGTTGCGTGCCTTTGGGGACTTTCGCTACAAGTGGTCCCAG
GAAATAATGCAGCAGTGTTGCTGCCGATGTTCGGCGTGCAAGCAATGCGC
GATTACTATACGCCACCGTACTATCGCCCGCCCGGATGTCAGCAGCACGA
TGGGGTCCAACGAACAGTTTCTAGTCATCGCAGCGACGCTATGGAATTCC
TCTCAGCAAGTGCTCAGCT
FMO12248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdp-RB | 2170 | CG12151-RB | 520..1573 | 7..1048 | 4795 | 97.7 | Plus |
| Pdp-RA | 1957 | CG12151-RA | 307..1360 | 7..1048 | 4795 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7732987..7733489 | 623..121 | 2500 | 99.8 | Minus |
| X | 23542271 | X | 7732464..7732882 | 1031..622 | 1510 | 94.5 | Minus |
| X | 23542271 | X | 7734017..7734132 | 122..7 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:03:21 has no hits.
FMO12248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:09 Download gff for
FMO12248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp-RA | 265..1328 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:00 Download gff for
FMO12248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp-RA | 301..1364 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:15 Download gff for
FMO12248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp-RA | 301..1364 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:15 Download gff for
FMO12248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7732437..7732881 | 623..1056 | 93 | <- | Minus |
| X | 7732988..7733489 | 121..622 | 99 | <- | Minus |
| X | 7734019..7734135 | 1..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:00 Download gff for
FMO12248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7626470..7626914 | 623..1056 | 93 | <- | Minus |
| arm_X | 7627021..7627522 | 121..622 | 99 | <- | Minus |
| arm_X | 7628052..7628168 | 1..120 | 96 | | Minus |
