FMO12250.5prime Sequence
554 bp (514 high quality bases) assembled on 2012-08-29
> FMO12250.5prime
GTCGACATGACTCGAAAACAAATTGCTACGCCCCGCTGTGAAACTATCTC
CAAATTGGTGGTCAGCGTCGGCAGTGGCGAAACTTTTCTTACTTATGCAG
ATGCTACAACACGATCCTTCTGCGCGAATCCCTCGTGGCTGAACTTTCAA
AATGGCATGATGGAAGTGGGGCCGATTAGTAAACCGAATCCCCATGATTC
TCAAAAGGAGGCAACCTCATTTCTGGAGCGACATTTCGGAAGCAAGCGTC
TGGACTCCGAGCAAATGAACGCGGAATTTAAGAACAGGAAGACGATTATC
TGGCACACTTGGCTGGTGGAGAAGGTGCGGTTTCCTCCAGCTCAGTGTGC
GGTCATCAAGGAATGGAAGGATCCAATCACGGAGACTCTGGGCATTTGCT
ATTGTTCCTGGCATTTGCAGAGCTGCATGGTCTGGCAGCTTATTCTCTTT
AATCGAATGACGGATGCCAAGTGCTTCTGTTCGCGAATCAAGAAAACGAT
GGACATTGTCAACTGTCTCGTTGACTCGGAAGTGCAACACGTTAAAAATT
TAAT
FMO12250.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24c-RC | 2251 | CG9002-RC | 1473..2021 | 6..553 | 2570 | 98 | Plus |
| CG30461-RJ | 2251 | CG30461-RJ | 1473..2021 | 6..553 | 2570 | 98 | Plus |
| CG30461-RI | 861 | CG30461-RI | 83..631 | 6..553 | 2570 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16996356..16996752 | 473..77 | 1895 | 98.5 | Minus |
| 2R | 25286936 | 2R | 16996992..16997063 | 77..6 | 360 | 100 | Minus |
| 2R | 25286936 | 2R | 16996236..16996302 | 539..473 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:03:39 has no hits.
FMO12250.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:13 Download gff for
FMO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30461-RD | 61..614 | 1..553 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:10 Download gff for
FMO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24c-RC | 1468..2021 | 1..553 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:25 Download gff for
FMO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30461-RI | 78..631 | 1..553 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:25 Download gff for
FMO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16996236..16996301 | 474..539 | 98 | <- | Minus |
| 2R | 16996356..16996751 | 78..473 | 98 | <- | Minus |
| 2R | 16996992..16997068 | 1..77 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:10 Download gff for
FMO12250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12883741..12883806 | 474..539 | 98 | <- | Minus |
| arm_2R | 12883861..12884256 | 78..473 | 98 | <- | Minus |
| arm_2R | 12884497..12884573 | 1..77 | 96 | | Minus |
