FMO12252.5prime Sequence
632 bp (630 high quality bases) assembled on 2012-08-29
> FMO12252.5prime
TCGGACATGTCAATGTTAATAAAAAGAGCGTCTGGTTTAGCTCGACAGTT
AGCCCGGCCACTTGTTGCATCACGTAATTTGGCGTCGGCAGCGCCCTATG
GCGATGGAACTGAAGTTCTCGTGGAGCGTTTGGATGGAGCTCGGCAGGGT
ATCTCAGTTATTGGCCTAAACCGACCAGCAGCAAAGAATTCCTTTAGCCG
GGGAATGGTGGAGACCTTCAACGATGTCCTGGAAGATATAAAGAAGGATA
ATGGATCGAGGGTGGTTGTATTGAGGAGTCTGAGCCCTGGAATCTTCTGT
GCCGGAGCGGATTTGAAAGAGCGAAAAGGCATGACTCCCGAGGAAGCCAC
CGAATTTGTAAAAGAGCTCAGGGGACTGCTTATTGCCATTGAGCAGCTGC
CCATGCCGGTAATCGCCGCTGTGGATGGAGCTGCTCTCGGCGGATGTCTG
GAAATGGCTCTGGCCTGTGACATCCGGACTGCTGCTAGCGACACGAACAT
GGGTCTGGTGGAGACAAGGTTAGCCATCATACCAGGAGCTGGTGGCACCC
ATAGACTGCCCCGCATTCTGTCCCCTGCTTCTGGCCAAATAACTCATTTT
CACGGCATCGAGTGTGTAACGGATCAAAGGCG
FMO12252.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8778-RA | 1124 | CG8778-RA | 83..706 | 7..632 | 2975 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12652083..12652405 | 329..7 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 12651719..12652022 | 632..327 | 1325 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:03:41 has no hits.
FMO12252.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:14 Download gff for
FMO12252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8778-RA | 73..701 | 1..632 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:12 Download gff for
FMO12252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8778-RA | 78..706 | 1..632 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:27 Download gff for
FMO12252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8778-RA | 78..706 | 1..632 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:27 Download gff for
FMO12252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12651719..12652020 | 329..632 | 97 | <- | Minus |
| 2R | 12652084..12652409 | 1..328 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:12 Download gff for
FMO12252.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8539224..8539525 | 329..632 | 97 | <- | Minus |
| arm_2R | 8539589..8539914 | 1..328 | 98 | | Minus |
