Clone FMO12263 Report

Search the DGRC for FMO12263

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:122
Well:63
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11320-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO12263.5prime Sequence

1072 bp (867 high quality bases) assembled on 2012-08-29

> FMO12263.5prime
AGTCGACATGGGAAGGCGATTGCCCAGCTTTTGGCTGCTGCTCCTGCAGA
GCGTGTGTTTCAGCCAGGCCAGCTTTTCGGAGCTAAACAATTCGGATCCC
AAGTTCAGCGGTCCAATCAACAACTCAACAGTTCCCGTGGGACGGGATGC
CCTACTCACGTGTGTTGTCCACGACCTGGTTAGCTTCAAGGTGGCCTGGC
TGCGAGTGGACACGCAGACGATACTGAGCATCCAGAACCACGTCATCACC
AAGAACCATCGCATCTCCATCTCCCACACGGAGCATCGGATCTGGCAGCT
AAAAATACGCGATGTTCAGGAATCGGATCGCGGATGGTACATGTGCCAAA
TCAACACGGATCCCATGAAGAGCCAAATGGGCTACCTGGATGTGGTGGTG
CCGCCAGACATTGTAGACTATCAAACCAGTCAGGATGTGGTTCGTTTCAC
GGGACAGAACGTAACACTCACTTGCAGTGCAACGGGAGTGCCCATGCCCA
CCATCACCTGGCGTCGCGAGGAAGCGACTCCGATACTGATTTCAGACGAC
GGCGATCGGGAAGTGTTCAGCGTGGAGGGTCAGAATCTCACCCTGTGGCA
AGTGCAGCGCTCCCACATGGGCGCCTATCTCTGCATCGCCTCCAACGGAG
TGCCACCCACAGTGTGCAAACGCGTCATGCTGGTGGTGAATTTTGCGCCC
ACGATCTGGACACGCTACGATACCATCTACGTGGGCCTGGGCCAGAAGCT
GACGCTGGAGTGCATCACAGAATCGCAGCCGGCATCGGTGAACTTTCTGG
CTGAGGGATTCGCATTTGCTGCAAGGAGGTTCCTACGAGTCGGTCTCAGT
GGACCACGTCTTCGGGATTGTGATTCCGGATCACCCTGCGTCCAATACCG
AATAGAGATTCCGGAGAGTACATAATGCAGGGCAAAGATGCCGATGGGCT
CAGACTGTATCGGATTATACCCGTGCACATAAGGCCAGCAGCATGGACAG
CACTTCGCATCCAATCTTCCTCCCGGAAGGTCCGTTTCATTTCTCCGAAA
AATAACATCGCAAAATGTCTGG

FMO12263.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11320-RB 1327 CG11320-RB 191..1250 8..1071 4665 96.7 Plus
CG14010-RB 2988 CG14010-RB 547..835 134..422 305 75 Plus
CG14010-RD 2335 CG14010-RD 547..835 134..422 305 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6617760..6618116 692..336 1740 99.2 Minus
2L 23513712 2L 6618173..6618418 338..93 1230 100 Minus
2L 23513712 2L 6617426..6617706 978..693 1000 94.1 Minus
2L 23513712 2L 6621426..6621510 92..8 425 100 Minus
2L 23513712 2L 5611028..5611090 398..336 255 93.7 Minus
2L 23513712 2L 5640292..5640349 393..336 215 91.4 Minus
Blast to na_te.dros performed on 2014-11-28 18:03:50 has no hits.

FMO12263.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:16 Download gff for FMO12263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11320-RB 183..1219 1..1041 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:17 Download gff for FMO12263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11320-RB 183..1219 1..1041 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:31 Download gff for FMO12263.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11320-RB 183..1219 1..1041 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:31 Download gff for FMO12263.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6617425..6617706 693..978 94 <- Minus
2L 6617760..6618115 337..692 99 <- Minus
2L 6618175..6618418 93..336 100 <- Minus
2L 6621426..6621516 1..92 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:17 Download gff for FMO12263.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6617425..6617706 693..978 94 <- Minus
arm_2L 6617760..6618115 337..692 99 <- Minus
arm_2L 6618175..6618418 93..336 100 <- Minus
arm_2L 6621426..6621516 1..92 95   Minus