FMO12264.5prime Sequence
996 bp (930 high quality bases) assembled on 2012-08-29
> FMO12264.5prime
AGTCGACATGGAGATGGCCTACAATGCGTCATCGTCGGCGGCCTCCGTCG
GCTCTGCTTCTGCCGCCGCCTCTGCCACCGCCTCCTTCGCCTTCACCAAC
ACCGCCAAGCTGCCCATCGAAACGGTGAAGCGCCTGATTGCCGCCGTCTC
ACGACGTCCGATGTTGTGGCTGCGCAACAATGCCAATGGCCAGAAGCGCA
GCGACATCACGCCTGTTTGGTTCGAGGTGGGTCAGGATGTGAATTTGCCA
GCCGACATCTGCCGAATTAAGTGGGGCCACCTGAGGGACAACTTTCGCAA
GGTGTACATCCGCAATAACCTGTCCAATGAGACGCCCTCGTCGTGGCGCT
TCTACAACGATATGCGGTTCATGGAGCCCGCCGTTCACGAGAATATCATG
CGTCAGACGCGAAGCAGCAGCAAGAAGCACCCACCCGGACACTGGACGGA
GAACAATAATGTGCTGGGGCCGGACAAGTATGACTCAATGCCCATTGTTG
CTACGGAGCCCATATGCGAGCTCAGCCACAGCTATGACTCGGAGCTACAC
CAGCCCAGCTTCTCGGACATCAGTTCGTTCTTCGAGGATCGCGACTGCCA
GCCGCCGGAGAATAAGAGATTTAAGTCGGAGCCCAGTCAGAGGGAGGAGG
ACGAGGAGGATGACTAAGACTTCGACGAAGATGCCGCCTCGGAGAACTTG
GAAGAGGAACGCGGCAATCGTGCCGATGCTGCCAGTTCCGGTGTATTCAC
CATAGAAGTGCTCGATGACGACGACGAAATGGAGCAGGCGGTGACCAAGA
CCATGGCGAAAACACTAGCCACGGCGGATCCAGCCTGAAGAGCGAGCAGG
AGGCCAAGGTGTTCTCCAATTCGCAGTCACCCACCGCCGATCTGCCATTC
AAGTATATCAGCACGGATGTGGCCACGAATAACTATCCCTCTGGTGGAGA
TCTCCAGGACTAAGGCGGAATCGCATGGTTCCTGCTCAGCCTGATG
FMO12264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coop-RB | 1413 | CG1621-RB | 121..1110 | 5..996 | 4745 | 98.8 | Plus |
| Coop-RA | 1690 | CG1621-RA | 398..1387 | 5..996 | 4745 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7491172..7491884 | 960..249 | 3425 | 99 | Minus |
| 2R | 25286936 | 2R | 7491946..7492192 | 251..5 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:03:53 has no hits.
FMO12264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:17 Download gff for
FMO12264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1621-RA | 383..1377 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:20 Download gff for
FMO12264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coop-RA | 393..1387 | 1..996 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:32 Download gff for
FMO12264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coop-RA | 393..1387 | 1..996 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:32 Download gff for
FMO12264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7491139..7491881 | 252..996 | 98 | <- | Minus |
| 2R | 7491946..7492193 | 1..251 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:20 Download gff for
FMO12264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3378644..3379386 | 252..996 | 98 | <- | Minus |
| arm_2R | 3379451..3379698 | 1..251 | 98 | | Minus |
