FMO12266.5prime Sequence
1092 bp (1005 high quality bases) assembled on 2012-08-29
> FMO12266.5prime
TCGACATGGAAGATAACAAGGAGCTGCAATGCTTAATATGCAAATATTCG
GACACTGACGACCTGGTCTTTGGCGAATGGATGATTGTACGCAATTTGCA
GGTGCACTATTTTTGCCTGCTACTCTCAACGCATTTGCCGCAGCGCGGCG
GAGATAGCAGTGGAATCCTGGGATTTCTGCTTCGCGATATCCGCGAGGAG
GCAGCCGCCGCGGAGAAGAGGAAATGTTGGTACTGCAATAAGATTGGGGC
CAGTTTGCAATGCGATCGTTGCCGGTCATTGTTTCACCTGAAGTGCGGCC
TGGAGAATCGCGCCGTTTTCGAGTTCTGCGGCCAATACAAAAGCTACTGC
TACAAATGCAGGCCGATGGATGACTACAAGCGACAGCTGCAGTCGAATCC
GCCGAGGAACGCCACTTGCCCCATCTGCTTCAGTTCCATCTATAAGGTAG
AGCTGCATTGCGTTGTGTACGGTGACTGCTGCCGCCTCGGATTCGCCCAT
AAGAAATGCATGCGTCAGTACGCTCTGACCTCCGGATATTACTTGCGTTG
CATTTGGTGTCGTTCGGAACGTTTCAGGGATTCCATACGCCTGCAGTCGG
TATTCGTGCCCGATCGCGATGCCACGTGGGAGAAGCAACGGAACGCCTAT
AGGGAGCTCCACGAGCGCAATCTGAAATGCGACCAGCCCAACTGCCTGTG
CCCCAGTGGTAGAACTTATAATAGATTATCGTGGGTGATACTATGCTGCA
GTTCTTGTGCCGCCACTTCGGCTCATCTTAAATGCTTGGTGGGCGCCCTG
CGACTGCCGAAGAAGCGCGAGCGTACAGATTTCAAGTGCTCTATGTGCCT
GGACGTGGAGAGGAGGATTGCTGAAGGACCGGCTCGCACAACAGAGAAAC
CAATGCTGACGGCGACAACCAGGTGGATGGCTCTTTTTATGTGCAAAATT
GGGACCCGATGCTGCAACTCGATCCTTACCCAGACTCCTGTTTTCTCGAG
AGACGAAGCGAACGAAGTAGTAATAATCACGGTTAATTCGTCACCGATTC
TTACCGCACAGGCGAGAGTATCCTTTATCGTGCCCAGGAGGA
FMO12266.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pie-RB | 2089 | CG5354-RB | 138..1173 | 6..1035 | 4985 | 99.2 | Plus |
| pie-RA | 2003 | CG5354-RA | 138..1173 | 6..1035 | 4985 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10421550..10422463 | 1025..119 | 4265 | 98.8 | Minus |
| 2L | 23513712 | 2L | 10422530..10422643 | 119..6 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:03:59 has no hits.
FMO12266.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-29 09:56:19 Download gff for
FMO12266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pie-RA | 134..1189 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:42:24 Download gff for
FMO12266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pie-RA | 133..1188 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:37 Download gff for
FMO12266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pie-RA | 133..1188 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:37 Download gff for
FMO12266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10421526..10422462 | 120..1047 | 98 | <- | Minus |
| 2L | 10422530..10422646 | 1..119 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:42:24 Download gff for
FMO12266.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10421526..10422462 | 120..1047 | 98 | <- | Minus |
| arm_2L | 10422530..10422646 | 1..119 | 97 | | Minus |
